Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT5G55970 | Q8LES9 | 29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING | 2.4 | putative protein contains similarity to unknown protein (pir |T08924);supported by full-length cDNA: Ceres:141890. |
AT5G55420 | #N/A | 35.2 | not assigned.unknown | 2.8 | unknown protein |
AT5G54720 | Q9FH33 | 31.1 | cell.organisation | 3.7 | putative protein similar to unknown protein (gb|AAD32884.1) |
AT5G54850 | Q9FFU5 | 35.2 | not assigned.unknown | 2.3 | unknown protein |
AT5G54960 | Q9FFT4 | 5.2 | fermentation.PDC | 2.1 | pyruvate decarboxylase (gb|AAB16855.1) |
AT5G54970 | Q9FFT3 | 35.2 | not assigned.unknown | 2.8 | putative protein similar to unknown protein (pir||T04819) |
AT5G54500 | Q9LSQ5 | 11.8 | lipid metabolism.'exotics'(steroids, squalene etc) | 2.5 | 1,4-benzoquinone reductase-like; Trp repressor binding protein-like |
AT5G54490 | Q9LSQ6 | 30.3 | signalling.calcium | 2.7 | putative protein similar to unknown protein (pir||T05752);supported by full-length cDNA: Ceres:109272. |
AT5G54650 | Q94B77 | 35.1.20 | not assigned.no ontology.formin homology 2 domain-containing protein | 2.6 | putative protein contains similarity to unknown protein (gb|AAF64546.1); supported by cDNA: gi_14596026_gb_AY042801.1_ |
AT5G53110 | Q9FGM5 | 35.2 | not assigned.unknown | 2.3 | putative protein similar to unknown protein (gb AAF25996.1) |
AT5G52760 | Q9LTE1 | 35.1 | not assigned.no ontology | 4 | putative protein similar to unknown protein (emb|CAA71173.1) |
AT5G52640 | P27323 | 20.2.1 | stress.abiotic.heat | 3.6 | heat-shock protein ; supported by cDNA: gi_166769_gb_M62984.1_ATHHSP83 |