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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT5G55970
Q8LES9
29.5.11.4.2
protein.degradation.ubiquitin.E3.RING
2.4
putative protein contains similarity to unknown protein (pir |T08924);supported by full-length cDNA: Ceres:141890.
AT5G55420
#N/A
35.2
not assigned.unknown
2.8
unknown protein
AT5G54720
Q9FH33
31.1
cell.organisation
3.7
putative protein similar to unknown protein (gb|AAD32884.1)
AT5G54850
Q9FFU5
35.2
not assigned.unknown
2.3
unknown protein
AT5G54960
Q9FFT4
5.2
fermentation.PDC
2.1
pyruvate decarboxylase (gb|AAB16855.1)
AT5G54970
Q9FFT3
35.2
not assigned.unknown
2.8
putative protein similar to unknown protein (pir||T04819)
AT5G54500
Q9LSQ5
11.8
lipid metabolism.'exotics'(steroids, squalene etc)
2.5
1,4-benzoquinone reductase-like; Trp repressor binding protein-like
AT5G54490
Q9LSQ6
30.3
signalling.calcium
2.7
putative protein similar to unknown protein (pir||T05752);supported by full-length cDNA: Ceres:109272.
AT5G54650
Q94B77
35.1.20
not assigned.no ontology.formin homology 2 domain-containing protein
2.6
putative protein contains similarity to unknown protein (gb|AAF64546.1); supported by cDNA: gi_14596026_gb_AY042801.1_
AT5G53110
Q9FGM5
35.2
not assigned.unknown
2.3
putative protein similar to unknown protein (gb AAF25996.1)
AT5G52760
Q9LTE1
35.1
not assigned.no ontology
4
putative protein similar to unknown protein (emb|CAA71173.1)
AT5G52640
P27323
20.2.1
stress.abiotic.heat
3.6
heat-shock protein ; supported by cDNA: gi_166769_gb_M62984.1_ATHHSP83
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