Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT5G59515 | #N/A | #N/A | #N/A | 2.1 | Expressed protein ; supported by full-length cDNA: Ceres: 157709. |
AT5G59450 | Q9LTI5 | 33.99 | development.unspecified | 2.2 | scarecrow-like 11 - like scarecrow-like 11, Arabidopsis thaliana, EMBL:AF036307; supported by cDNA: gi_14334655_gb_AY035001.1_ |
AT5G58940 | Q9FIL7 | 29.4.1.54 | protein.postranslational modification.kinase.receptor like cytoplasmatic kinase IV | 2 | receptor-like protein kinase precursor - like receptor-like protein kinase precursor, Madagascar periwinkle, PIR:T10060 |
AT5G58787 | B9DF79 | 29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING | 2.1 | Expressed protein ; supported by full-length cDNA: Ceres: 99033. |
AT1G25220 | Q42565 | 13.1.6.5.1 | amino acid metabolism.synthesis.aromatic aa.tryptophan.anthranilate synthase | 5 | anthranilate synthase beta chain ;supported by full-length cDNA: Ceres:6495. |
AT5G57480 | Q9FKM3 | 29.5.9 | protein.degradation.AAA type | 3.5 | putative protein contains similarity to AAA-type ATPase |
AT5G57500 | Q9FKM1 | 29.7 | protein.glycosylation | 3.1 | putative protein similar to unknown protein (gb|AAF08572.1);supported by full-length cDNA: Ceres:118484. |
AT5G57060 | Q9LTR7 | 35.2 | not assigned.unknown | 2.1 | putative protein similar to unknown protein (pir||T04261);supported by full-length cDNA: Ceres:6181. |
AT5G57190 | F4KAK5 | 11.3.8 | lipid metabolism.Phospholipid synthesis.phosphatidylserine decarboxylase | 3.2 | phosphatidylserine decarboxylase |
AT5G57220 | Q9LVD6 | 16.5.1.1.3.4 | secondary metabolism.sulfur-containing.glucosinolates.synthesis.indole.cytochrome P450 monooxygenase | 12.7 | cytochrome P450 |
AT5G56870 | Q9SCV8 | 26.3.2 | misc.gluco-, galacto- and mannosidases.beta-galactosidase | 2.8 | beta-galactosidase (emb|CAB64740.1) ; supported by cDNA: gi_15451017_gb_AY054589.1_ |
AT5G56950 | Q94K07 | 28.1 | DNA.synthesis/chromatin structure | 2.1 | nucleosome assembly protein |