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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT5G59515
#N/A
#N/A
#N/A
2.1
Expressed protein ; supported by full-length cDNA: Ceres: 157709.
AT5G59450
Q9LTI5
33.99
development.unspecified
2.2
scarecrow-like 11 - like scarecrow-like 11, Arabidopsis thaliana, EMBL:AF036307; supported by cDNA: gi_14334655_gb_AY035001.1_
AT5G58940
Q9FIL7
29.4.1.54
protein.postranslational modification.kinase.receptor like cytoplasmatic kinase IV
2
receptor-like protein kinase precursor - like receptor-like protein kinase precursor, Madagascar periwinkle, PIR:T10060
AT5G58787
B9DF79
29.5.11.4.2
protein.degradation.ubiquitin.E3.RING
2.1
Expressed protein ; supported by full-length cDNA: Ceres: 99033.
AT1G25220
Q42565
13.1.6.5.1
amino acid metabolism.synthesis.aromatic aa.tryptophan.anthranilate synthase
5
anthranilate synthase beta chain ;supported by full-length cDNA: Ceres:6495.
AT5G57480
Q9FKM3
29.5.9
protein.degradation.AAA type
3.5
putative protein contains similarity to AAA-type ATPase
AT5G57500
Q9FKM1
29.7
protein.glycosylation
3.1
putative protein similar to unknown protein (gb|AAF08572.1);supported by full-length cDNA: Ceres:118484.
AT5G57060
Q9LTR7
35.2
not assigned.unknown
2.1
putative protein similar to unknown protein (pir||T04261);supported by full-length cDNA: Ceres:6181.
AT5G57190
F4KAK5
11.3.8
lipid metabolism.Phospholipid synthesis.phosphatidylserine decarboxylase
3.2
phosphatidylserine decarboxylase
AT5G57220
Q9LVD6
16.5.1.1.3.4
secondary metabolism.sulfur-containing.glucosinolates.synthesis.indole.cytochrome P450 monooxygenase
12.7
cytochrome P450
AT5G56870
Q9SCV8
26.3.2
misc.gluco-, galacto- and mannosidases.beta-galactosidase
2.8
beta-galactosidase (emb|CAB64740.1) ; supported by cDNA: gi_15451017_gb_AY054589.1_
AT5G56950
Q94K07
28.1
DNA.synthesis/chromatin structure
2.1
nucleosome assembly protein
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