Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT2G30070 | O22397 | 34.15 | transport.potassium | 2.5 | high affinity K+ transporter (AtKUP1/AtKT1p) identical to GB:AF029876; supported by cDNA: gi_2654087_gb_AF033118.1_AF033118 |
AT2G39920 | O04195 | 26.13 | misc.acid and other phosphatases | 2.2 | hypothetical protein predicted by genscan;supported by full-length cDNA: Ceres:33701. |
AT2G44370 | O64871 | 35.1.26 | not assigned.no ontology.DC1 domain containing protein | 2.5 | unknown protein highly similar to GP|2435515|AF024504 |
AT2G19190 | O64483 | 30.2.1 | signalling.receptor kinases.leucine rich repeat I | 5.3 | putative receptor-like protein kinase |
AT2G33710 | P93007 | 27.3.3 | RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family | 2.4 | putative AP2 domain transcription factor |
AT2G02810 | O64503 | 34.11 | transport.NDP-sugars at the ER | 2.9 | unknown protein ;supported by full-length cDNA: Ceres:35441. |
AT2G30750 | O49340 | 26.1 | misc.cytochrome P450 | 7.8 | putative cytochrome P450 |
AT2G30770 | O49342 | 26.1 | misc.cytochrome P450 | 9.4 | putative cytochrome P450 |
AT2G32920 | O48773 | 21.1.1 | redox.thioredoxin.PDIL | 2.1 | putative protein disulfide isomerase ; supported by cDNA: gi_15810003_gb_AY054270.1_ |
AT2G39650 | O48813 | 35.2 | not assigned.unknown | 2.3 | unknown protein |
AT2G39660 | O48814 | 29.4.1.57 | protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII | 3.8 | putative protein kinase |
AT4G23190 | Q9ZP16 | 30.2.17 | signalling.receptor kinases.DUF 26 | 10.2 | serine/threonine kinase - like protein |