Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT5G07440 | Q38946 | 12.3.1 | N-metabolism.N-degradation.glutamate dehydrogenase | 2.4 | glutamate dehydrogenase 2 ; supported by cDNA: gi_14423477_gb_AF386976.1_AF386976 |
AT5G07100 | Q9C5T3 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 2.7 | SPF1-like protein SPF1 protein - Ipomoea batatas (sweet potato), PIR:S51529;supported by full-length cDNA: Ceres:115195. |
AT5G06860 | Q9M5J9 | 10.6.3 | cell wall.degradation.pectate lyases and polygalacturonases | 2 | polygalacturonase inhibiting protein 1; PGIP1 (gb|AAF69827.1) ;supported by full-length cDNA: Ceres:5344. |
AT5G05730 | P32068 | 13.1.6.5.1 | amino acid metabolism.synthesis.aromatic aa.tryptophan.anthranilate synthase | 4.1 | anthranilate synthase component I-1 precursor (sp|P32068) |
AT5G05300 | Q9FLC4 | 35.2 | not assigned.unknown | 4.2 | putative protein similar to unknown protein (gb|AAF01528.1) |
AT5G05140 | Q9FHK9 | 27.3.67 | RNA.regulation of transcription.putative transcription regulator | 2.6 | putative protein contains similarity to unknown protein (gb AAF19567.1) |
AT5G03630 | Q93WJ8 | 21.2.1 | redox.ascorbate and glutathione.ascorbate | 2.4 | monodehydroascorbate reductase (NADH) - like protein monodehydroascorbate reductase (NADH), cucumber, PIR:JU0182;supported by full-length cDNA: Ceres:34156. |
AT5G03610 | Q9LZS7 | 26.28 | misc.GDSL-motif lipase | 3.8 | putative protein proline-rich protein APG, Arabidopsis thaliana, PIR:S21961; supported by full-length cDNA: Ceres: 13022. |
AT5G03160 | Q9LYW9 | 20.2.1 | stress.abiotic.heat | 2.1 | putative protein P58 protein, Bos primigenius taurus, PIR:A56534;supported by full-length cDNA: Ceres:146009. |
AT5G60950 | Q9FME5 | 10.2.2 | cell wall.cellulose synthesis.COBRA | 3.1 | putative phytochelatin synthetase - like putative phytochelatin synthetase, Arabidopsis thaliana, EMBL:ATH6787 |
AT5G60410 | Q680Q4 | 27.3.67 | RNA.regulation of transcription.putative transcription regulator | 2.3 | putative protein |
AT5G59820 | Q42410 | 27.3.11 | RNA.regulation of transcription.C2H2 zinc finger family | 2.8 | zinc finger protein Zat12 ;supported by full-length cDNA: Ceres:40576. |