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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT5G07440
Q38946
12.3.1
N-metabolism.N-degradation.glutamate dehydrogenase
2.4
glutamate dehydrogenase 2 ; supported by cDNA: gi_14423477_gb_AF386976.1_AF386976
AT5G07100
Q9C5T3
27.3.32
RNA.regulation of transcription.WRKY domain transcription factor family
2.7
SPF1-like protein SPF1 protein - Ipomoea batatas (sweet potato), PIR:S51529;supported by full-length cDNA: Ceres:115195.
AT5G06860
Q9M5J9
10.6.3
cell wall.degradation.pectate lyases and polygalacturonases
2
polygalacturonase inhibiting protein 1; PGIP1 (gb|AAF69827.1) ;supported by full-length cDNA: Ceres:5344.
AT5G05730
P32068
13.1.6.5.1
amino acid metabolism.synthesis.aromatic aa.tryptophan.anthranilate synthase
4.1
anthranilate synthase component I-1 precursor (sp|P32068)
AT5G05300
Q9FLC4
35.2
not assigned.unknown
4.2
putative protein similar to unknown protein (gb|AAF01528.1)
AT5G05140
Q9FHK9
27.3.67
RNA.regulation of transcription.putative transcription regulator
2.6
putative protein contains similarity to unknown protein (gb AAF19567.1)
AT5G03630
Q93WJ8
21.2.1
redox.ascorbate and glutathione.ascorbate
2.4
monodehydroascorbate reductase (NADH) - like protein monodehydroascorbate reductase (NADH), cucumber, PIR:JU0182;supported by full-length cDNA: Ceres:34156.
AT5G03610
Q9LZS7
26.28
misc.GDSL-motif lipase
3.8
putative protein proline-rich protein APG, Arabidopsis thaliana, PIR:S21961; supported by full-length cDNA: Ceres: 13022.
AT5G03160
Q9LYW9
20.2.1
stress.abiotic.heat
2.1
putative protein P58 protein, Bos primigenius taurus, PIR:A56534;supported by full-length cDNA: Ceres:146009.
AT5G60950
Q9FME5
10.2.2
cell wall.cellulose synthesis.COBRA
3.1
putative phytochelatin synthetase - like putative phytochelatin synthetase, Arabidopsis thaliana, EMBL:ATH6787
AT5G60410
Q680Q4
27.3.67
RNA.regulation of transcription.putative transcription regulator
2.3
putative protein
AT5G59820
Q42410
27.3.11
RNA.regulation of transcription.C2H2 zinc finger family
2.8
zinc finger protein Zat12 ;supported by full-length cDNA: Ceres:40576.
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