top of page
Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

​

Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

​

AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT5G17990
Q02166
13.1.6.5.2
amino acid metabolism.synthesis.aromatic aa.tryptophan.anthranilate phosphoribosyltransferase
2.6
anthranilate phosphoribosyltransferase, chloroplast precursor (sp|Q02166) ; supported by cDNA: gi_15450851_gb_AY054506.1_
AT5G18130
Q9FK57
35.2
not assigned.unknown
2.4
putative protein similar to unknown protein (gb|AAF00631.1);supported by full-length cDNA: Ceres:10299.
AT5G17760
Q9FN75
29.5.9
protein.degradation.AAA type
2.3
BCS1 - like protein h-bcs1, Homo sapiens, EMBL:AF026849; supported by cDNA: gi_15810570_gb_AY056324.1_
AT5G17330
Q42521
13.1.1.1.1
amino acid metabolism.synthesis.central amino acid metabolism.GABA.Glutamate decarboxylase
2.4
glutamate decarboxylase 1 (GAD 1) (sp|Q42521) ; supported by cDNA: gi_497978_gb_U10034.1_ATU10034
AT5G16340
Q9FFE9
11.1.8
lipid metabolism.FA synthesis and FA elongation.acyl coa ligase
2.1
AMP-binding protein
AT5G12930
Q9LXU6
35.2
not assigned.unknown
6.6
putative protein predicted proteins
AT5G13200
Q9LYV6
17.1.3
hormone metabolism.abscisic acid.induced-regulated-responsive-activated
2.4
ABA-responsive protein - like ABA-responsive protein, Hordeum vulgare, EMBL:AF026538
AT5G13320
Q9LYU4
17.2.3
hormone metabolism.auxin.induced-regulated-responsive-activated
3.9
auxin-responsive - like protein Nt-gh3 deduced protein, Nicotiana tabacum, EMBL:AF123503
AT5G12160
#N/A
#N/A
#N/A
2
putative protein similar to unknown protein (pir||T09909)
AT5G11670
Q9LYG3
8.2.10
TCA / org transformation.other organic acid transformatons.malic
4.3
NADP dependent malic enzyme - like protein NADP dependent malic enzyme, P.vulgaris, EMBL:PVME1G; supported by cDNA: gi_16226465_gb_AF428407.1_AF428407
AT5G09800
Q9LXE3
27.3.64
RNA.regulation of transcription.PHOR1
3.1
putative protein various predicted proteins, Arabidopsis thaliana
AT5G08240
#N/A
35.2
not assigned.unknown
3.1
putative protein
bottom of page