Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT5G17990 | Q02166 | 13.1.6.5.2 | amino acid metabolism.synthesis.aromatic aa.tryptophan.anthranilate phosphoribosyltransferase | 2.6 | anthranilate phosphoribosyltransferase, chloroplast precursor (sp|Q02166) ; supported by cDNA: gi_15450851_gb_AY054506.1_ |
AT5G18130 | Q9FK57 | 35.2 | not assigned.unknown | 2.4 | putative protein similar to unknown protein (gb|AAF00631.1);supported by full-length cDNA: Ceres:10299. |
AT5G17760 | Q9FN75 | 29.5.9 | protein.degradation.AAA type | 2.3 | BCS1 - like protein h-bcs1, Homo sapiens, EMBL:AF026849; supported by cDNA: gi_15810570_gb_AY056324.1_ |
AT5G17330 | Q42521 | 13.1.1.1.1 | amino acid metabolism.synthesis.central amino acid metabolism.GABA.Glutamate decarboxylase | 2.4 | glutamate decarboxylase 1 (GAD 1) (sp|Q42521) ; supported by cDNA: gi_497978_gb_U10034.1_ATU10034 |
AT5G16340 | Q9FFE9 | 11.1.8 | lipid metabolism.FA synthesis and FA elongation.acyl coa ligase | 2.1 | AMP-binding protein |
AT5G12930 | Q9LXU6 | 35.2 | not assigned.unknown | 6.6 | putative protein predicted proteins |
AT5G13200 | Q9LYV6 | 17.1.3 | hormone metabolism.abscisic acid.induced-regulated-responsive-activated | 2.4 | ABA-responsive protein - like ABA-responsive protein, Hordeum vulgare, EMBL:AF026538 |
AT5G13320 | Q9LYU4 | 17.2.3 | hormone metabolism.auxin.induced-regulated-responsive-activated | 3.9 | auxin-responsive - like protein Nt-gh3 deduced protein, Nicotiana tabacum, EMBL:AF123503 |
AT5G12160 | #N/A | #N/A | #N/A | 2 | putative protein similar to unknown protein (pir||T09909) |
AT5G11670 | Q9LYG3 | 8.2.10 | TCA / org transformation.other organic acid transformatons.malic | 4.3 | NADP dependent malic enzyme - like protein NADP dependent malic enzyme, P.vulgaris, EMBL:PVME1G; supported by cDNA: gi_16226465_gb_AF428407.1_AF428407 |
AT5G09800 | Q9LXE3 | 27.3.64 | RNA.regulation of transcription.PHOR1 | 3.1 | putative protein various predicted proteins, Arabidopsis thaliana |
AT5G08240 | #N/A | 35.2 | not assigned.unknown | 3.1 | putative protein |