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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT5G37780
P0DH95
30.3
signalling.calcium
2.1
calmodulin 1 (CAM1) ; supported by cDNA: gi_15081766_gb_AY048276.1_
AT5G35735
Q9FKH6
17.2.3
hormone metabolism.auxin.induced-regulated-responsive-activated
4
Expressed protein ; supported by full-length cDNA: Ceres: 32450.
AT5G24620
B3LFC8
20.1
stress.biotic
2.5
thaumatin-like protein
AT5G24110
Q9FL62
27.3.32
RNA.regulation of transcription.WRKY domain transcription factor family
18.5
unknown protein ;supported by full-length cDNA: Ceres:6469.
AT5G23510
Q1ECD6
35.2
not assigned.unknown
3.7
putative protein similar to unknown protein (gb AAF01580.1)
AT5G22580
Q9FK81
35.2
not assigned.unknown
2.7
unknown protein ; supported by cDNA: gi_14190416_gb_AF378886.1_AF378886
AT5G22770
Q8LPL6
31.4
cell.vesicle transport
2
alpha-adaptin
AT5G22630
Q9FNJ8
13.1.6.3.1
amino acid metabolism.synthesis.aromatic aa.phenylalanine.arogenate dehydratase / prephenate dehydratase
2.5
chorismate mutase/prephenate dehydratase-like protein ; supported by cDNA: gi_16604397_gb_AY058097.1_
AT5G22250
Q9FMS6
27.1.19
RNA.processing.ribonucleases
3.4
CCR4-associated factor-like protein
AT5G22380
Q9FMR3
33.99
development.unspecified
2
NAC-domain protein-like ;supported by full-length cDNA: Ceres:29829.
AT5G18470
Q94K76
26.16
misc.myrosinases-lectin-jacalin
7.2
putative protein S-receptor kinase PK3 precursor, maize, PIR:T02753;supported by full-length cDNA: Ceres:154037.
AT5G18400
Q8L7Z3
35.2
not assigned.unknown
2.3
putative protein rsc43, Dictyostelium discoideum, EMBL:AF011338;supported by full-length cDNA: Ceres:6084.
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