Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT5G37780 | P0DH95 | 30.3 | signalling.calcium | 2.1 | calmodulin 1 (CAM1) ; supported by cDNA: gi_15081766_gb_AY048276.1_ |
AT5G35735 | Q9FKH6 | 17.2.3 | hormone metabolism.auxin.induced-regulated-responsive-activated | 4 | Expressed protein ; supported by full-length cDNA: Ceres: 32450. |
AT5G24620 | B3LFC8 | 20.1 | stress.biotic | 2.5 | thaumatin-like protein |
AT5G24110 | Q9FL62 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 18.5 | unknown protein ;supported by full-length cDNA: Ceres:6469. |
AT5G23510 | Q1ECD6 | 35.2 | not assigned.unknown | 3.7 | putative protein similar to unknown protein (gb AAF01580.1) |
AT5G22580 | Q9FK81 | 35.2 | not assigned.unknown | 2.7 | unknown protein ; supported by cDNA: gi_14190416_gb_AF378886.1_AF378886 |
AT5G22770 | Q8LPL6 | 31.4 | cell.vesicle transport | 2 | alpha-adaptin |
AT5G22630 | Q9FNJ8 | 13.1.6.3.1 | amino acid metabolism.synthesis.aromatic aa.phenylalanine.arogenate dehydratase / prephenate dehydratase | 2.5 | chorismate mutase/prephenate dehydratase-like protein ; supported by cDNA: gi_16604397_gb_AY058097.1_ |
AT5G22250 | Q9FMS6 | 27.1.19 | RNA.processing.ribonucleases | 3.4 | CCR4-associated factor-like protein |
AT5G22380 | Q9FMR3 | 33.99 | development.unspecified | 2 | NAC-domain protein-like ;supported by full-length cDNA: Ceres:29829. |
AT5G18470 | Q94K76 | 26.16 | misc.myrosinases-lectin-jacalin | 7.2 | putative protein S-receptor kinase PK3 precursor, maize, PIR:T02753;supported by full-length cDNA: Ceres:154037. |
AT5G18400 | Q8L7Z3 | 35.2 | not assigned.unknown | 2.3 | putative protein rsc43, Dictyostelium discoideum, EMBL:AF011338;supported by full-length cDNA: Ceres:6084. |