Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT5G41990 | Q944Q0 | 30.6 | signalling.MAP kinases | 2 | MAP kinase ; supported by cDNA: gi_15983508_gb_AF424629.1_AF424629 |
AT5G42010 | Q9FHY2 | 35.1 | not assigned.no ontology | 3.2 | putative protein contains similarity to unknown protein (gb|AAF19687.1) |
AT5G41180 | Q9FLL2 | 30.2.6 | signalling.receptor kinases.leucine rich repeat VI | 2 | receptor kinase-like protein |
AT5G40760 | Q9FJI5 | 7.1.1 | OPP.oxidative PP.G6PD | 3.3 | glucose-6-phosphate dehydrogenase |
AT5G39670 | Q93Z27 | 30.3 | signalling.calcium | 2.3 | calcium-binding protein - like cbp1 calcium-binding protein, Lotus japonicus, EMBL:LJA251808; supported by cDNA: gi_16648829_gb_AY058192.1_ |
AT5G39320 | Q9FM01 | 10.1.4 | cell wall.precursor synthesis.UDP-Glc dehydrogenase (UGD) | 2.3 | UDP-glucose dehydrogenase-like protein UDP-glucose dehydrogenase - Glycine max, EMBL:U53418 |
AT5G38900 | Q9FMB1 | 35.1 | not assigned.no ontology | 2.9 | frnE protein - like frnE protein, Deinococcus radiodurans, PIR:E75491;supported by full-length cDNA: Ceres:10982. |
AT5G39020 | Q9FID6 | 30.2.16 | signalling.receptor kinases.Catharanthus roseus-like RLK1 | 3.2 | receptor protein kinase - like protein receptor-protein kinase-like protein, Arabidopsis thaliana, PIR:T45786 |
AT5G39050 | Q940Z5 | 16.8.1.21 | secondary metabolism.flavonoids.anthocyanins.anthocyanin 5-aromatic acyltransferase | 4.2 | acyltransferase - like protein Anthocyanin 5-aromatic acyltransferase, Gentiana triflora, EMBL:AB010708; supported by cDNA: gi_15450468_gb_AY052335.1_ |
AT5G38710 | Q6NKX1 | 13.2.2.2 | amino acid metabolism.degradation.glutamate family.proline | 9.7 | proline oxidase, mitochondrial precursor -like protein PROLINE OXIDASE, MITOCHONDRIAL PRECURSOR, Arabidopsis thaliana, SWISSNEW:PROD |
AT5G38310 | Q9FKN2 | 35.2 | not assigned.unknown | 2.2 | hypothetical protein |
AT5G37600 | Q56WN1 | 12.2.2 | N-metabolism.ammonia metabolism.glutamine synthetase | 2.3 | glutamate--ammonia ligase ; supported by cDNA: gi_16226386_gb_AF428386.1_AF428386 |