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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT5G41990
Q944Q0
30.6
signalling.MAP kinases
2
MAP kinase ; supported by cDNA: gi_15983508_gb_AF424629.1_AF424629
AT5G42010
Q9FHY2
35.1
not assigned.no ontology
3.2
putative protein contains similarity to unknown protein (gb|AAF19687.1)
AT5G41180
Q9FLL2
30.2.6
signalling.receptor kinases.leucine rich repeat VI
2
receptor kinase-like protein
AT5G40760
Q9FJI5
7.1.1
OPP.oxidative PP.G6PD
3.3
glucose-6-phosphate dehydrogenase
AT5G39670
Q93Z27
30.3
signalling.calcium
2.3
calcium-binding protein - like cbp1 calcium-binding protein, Lotus japonicus, EMBL:LJA251808; supported by cDNA: gi_16648829_gb_AY058192.1_
AT5G39320
Q9FM01
10.1.4
cell wall.precursor synthesis.UDP-Glc dehydrogenase (UGD)
2.3
UDP-glucose dehydrogenase-like protein UDP-glucose dehydrogenase - Glycine max, EMBL:U53418
AT5G38900
Q9FMB1
35.1
not assigned.no ontology
2.9
frnE protein - like frnE protein, Deinococcus radiodurans, PIR:E75491;supported by full-length cDNA: Ceres:10982.
AT5G39020
Q9FID6
30.2.16
signalling.receptor kinases.Catharanthus roseus-like RLK1
3.2
receptor protein kinase - like protein receptor-protein kinase-like protein, Arabidopsis thaliana, PIR:T45786
AT5G39050
Q940Z5
16.8.1.21
secondary metabolism.flavonoids.anthocyanins.anthocyanin 5-aromatic acyltransferase
4.2
acyltransferase - like protein Anthocyanin 5-aromatic acyltransferase, Gentiana triflora, EMBL:AB010708; supported by cDNA: gi_15450468_gb_AY052335.1_
AT5G38710
Q6NKX1
13.2.2.2
amino acid metabolism.degradation.glutamate family.proline
9.7
proline oxidase, mitochondrial precursor -like protein PROLINE OXIDASE, MITOCHONDRIAL PRECURSOR, Arabidopsis thaliana, SWISSNEW:PROD
AT5G38310
Q9FKN2
35.2
not assigned.unknown
2.2
hypothetical protein
AT5G37600
Q56WN1
12.2.2
N-metabolism.ammonia metabolism.glutamine synthetase
2.3
glutamate--ammonia ligase ; supported by cDNA: gi_16226386_gb_AF428386.1_AF428386
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