Species & Dataset
Experiment
Foliar ozone injury
-
Arabidopsis thaliana
-
Common name: Thale cress, Mouse-ear cress
-
Family: Brassicaceae
-
-
Cultivar : Columbia (ecotype Col-0)
-
Tissue: Rosettes
-
Ozone concentration: 300 ppb
-
Ozone exposure: 6 hours (0800-1400 h)
-
Platform: Microarray analysis
-
Year of study: 2006
-
Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT3G51110 | F4J390 | 31.3 | cell.cycle | 2 | crooked neck-like protein crooked neck protein (CRN) - Drosophila melanogaster, SWISSPROT:CRN_DROME; supported by cDNA: gi_15293116_gb_AY050992.1_ |
AT3G51160 | P93031 | 10.1.7 | cell wall.precursor synthesis.GMD | 2.6 | GDP-D-mannose-4,6-dehydratase (MUR1) ;supported by full-length cDNA: Ceres:11217. |
AT3G50930 | Q8VZG2 | 29.5.9 | protein.degradation.AAA type | 2.9 | BCS1 protein-like protein Homo sapiens h-bcs1 (BCS1) mRNA, nuclear gene encoding mitochondrial protein which is involved in the expression of functional mitochondrial ubiquinol-cytochrome c reductase complex probably via the control of expression of Ri |
AT3G50900 | #N/A | 28.99 | DNA.unspecified | 2.2 | hypothetical protein hypothetical protein - Arabidopsis thaliana chromosome 4 AP2 contig, PID:e353223;supported by full-length cDNA: Ceres:10044. |
AT3G50550 | Q8L8Y4 | 35.2 | not assigned.unknown | 2.3 | hypothetical protein ;supported by full-length cDNA: Ceres:93591. |
AT3G50500 | Q39192 | 29.4 | protein.postranslational modification | 2.3 | protein kinase SPK-2 ;supported by full-length cDNA: Ceres:3988. |
AT3G50760 | Q9S7G2 | 26.2 | misc.UDP glucosyl and glucoronyl transferases | 2.7 | putative protein UDP-glucose:(glucosyl) LPS alpha1,3-glucosyltransferase WaaO, E.coli, EMBL:AF019746 |
AT5G44420 | Q9FI23 | 20.1.7.12 | stress.biotic.PR-proteins.plant defensins | 3.3 | antifungal protein-like (PDF1.2) |
AT5G44070 | Q9S7Z3 | 15.2 | metal handling.binding, chelation and storage | 2.5 | phytochelatin synthase (gb|AAD41794.1) ; supported by cDNA: gi_14532653_gb_AY039951.1_ |
AT5G43190 | Q9FHS6 | 29.5.11.4.3.2 | protein.degradation.ubiquitin.E3.SCF.FBOX | 2.1 | F-box protein family, AtFBX6 contains similarity to unusual floral organs (UFO) GI:4376159 from [Arabidopsis thaliana] |
AT5G42380 | Q9FIH9 | 30.3 | signalling.calcium | 4 | putative protein contains similarity to calmodulin;supported by full-length cDNA: Ceres:99348. |
AT5G42420 | Q9FIH5 | 35.1 | not assigned.no ontology | 2.6 | putative protein strong similarity to unknown protein (gb|AAF04433.1) |