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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT3G51110
F4J390
31.3
cell.cycle
2
crooked neck-like protein crooked neck protein (CRN) - Drosophila melanogaster, SWISSPROT:CRN_DROME; supported by cDNA: gi_15293116_gb_AY050992.1_
AT3G51160
P93031
10.1.7
cell wall.precursor synthesis.GMD
2.6
GDP-D-mannose-4,6-dehydratase (MUR1) ;supported by full-length cDNA: Ceres:11217.
AT3G50930
Q8VZG2
29.5.9
protein.degradation.AAA type
2.9
BCS1 protein-like protein Homo sapiens h-bcs1 (BCS1) mRNA, nuclear gene encoding mitochondrial protein which is involved in the expression of functional mitochondrial ubiquinol-cytochrome c reductase complex probably via the control of expression of Ri
AT3G50900
#N/A
28.99
DNA.unspecified
2.2
hypothetical protein hypothetical protein - Arabidopsis thaliana chromosome 4 AP2 contig, PID:e353223;supported by full-length cDNA: Ceres:10044.
AT3G50550
Q8L8Y4
35.2
not assigned.unknown
2.3
hypothetical protein ;supported by full-length cDNA: Ceres:93591.
AT3G50500
Q39192
29.4
protein.postranslational modification
2.3
protein kinase SPK-2 ;supported by full-length cDNA: Ceres:3988.
AT3G50760
Q9S7G2
26.2
misc.UDP glucosyl and glucoronyl transferases
2.7
putative protein UDP-glucose:(glucosyl) LPS alpha1,3-glucosyltransferase WaaO, E.coli, EMBL:AF019746
AT5G44420
Q9FI23
20.1.7.12
stress.biotic.PR-proteins.plant defensins
3.3
antifungal protein-like (PDF1.2)
AT5G44070
Q9S7Z3
15.2
metal handling.binding, chelation and storage
2.5
phytochelatin synthase (gb|AAD41794.1) ; supported by cDNA: gi_14532653_gb_AY039951.1_
AT5G43190
Q9FHS6
29.5.11.4.3.2
protein.degradation.ubiquitin.E3.SCF.FBOX
2.1
F-box protein family, AtFBX6 contains similarity to unusual floral organs (UFO) GI:4376159 from [Arabidopsis thaliana]
AT5G42380
Q9FIH9
30.3
signalling.calcium
4
putative protein contains similarity to calmodulin;supported by full-length cDNA: Ceres:99348.
AT5G42420
Q9FIH5
35.1
not assigned.no ontology
2.6
putative protein strong similarity to unknown protein (gb|AAF04433.1)
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