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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT3G54640
Q42529
13.1.6.5.5
amino acid metabolism.synthesis.aromatic aa.tryptophan.tryptophan synthase
3.6
tryptophan synthase alpha chain ; supported by full-length cDNA: Ceres: 40110.
AT3G54620
Q9M1G6
27.3.35
RNA.regulation of transcription.bZIP transcription factor family
2
Expressed protein ; supported by cDNA: gi_15451129_gb_AY054645.1_
AT3G54150
A0A1I9LLF7
33.99
development.unspecified
5.7
embryonic abundant protein -like embryonic abundant protein EMB34, Picea glauca, PIR:T09281; supported by full-length cDNA: Ceres: 6529.
AT3G54420
Q9M2U5
20.1
stress.biotic
4.2
class IV chitinase (CHIV)
AT3G53810
Q9M345
30.2.19
signalling.receptor kinases.legume-lectin
2.6
serine/threonine-specific kinase like protein serine/threonine-specific kinase (EC 2.7.1.-) precursor - Arabidopsis thaliana, PIR:S68589
AT3G53990
Q8LC99
20.2.2
stress.abiotic.cold
2.2
hypothetical protein ER6 protein - Lycopersicon esculentum, EMBL:AF096262; supported by full-length cDNA: Ceres: 269951.
AT3G53660
#N/A
#N/A
#N/A
3.3
putative protein predicted protein, Arabidopsis thaliana
AT3G53670
#N/A
35.2
not assigned.unknown
2.2
putative protein predicted protein, Arabidopsis thaliana
AT3G53150
Q9SCP6
26.2
misc.UDP glucosyl and glucoronyl transferases
3.4
glucosyltransferase - like protein glucosyltransferase IS10a, salicylate-induced, Nicotiana tabacum, PIR:T03745
AT3G52400
Q9SVC2
31.4
cell.vesicle transport
3.8
syntaxin-like protein synt4 ;supported by full-length cDNA: Ceres:37248.
AT3G52430
Q9S745
20.1
stress.biotic
2.6
putative protein other hypothetical proteins in Arabidopsis thaliana; supported by cDNA: gi_6457330_gb_AF188329.1_AF188329
AT3G51330
A0A1I9LM46
29.5.4
protein.degradation.aspartate protease
2.4
putative protein several hypothetical proteins - Arabidopsis thaliana; supported by cDNA: gi_15010763_gb_AY045683.1_
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