Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT3G54640 | Q42529 | 13.1.6.5.5 | amino acid metabolism.synthesis.aromatic aa.tryptophan.tryptophan synthase | 3.6 | tryptophan synthase alpha chain ; supported by full-length cDNA: Ceres: 40110. |
AT3G54620 | Q9M1G6 | 27.3.35 | RNA.regulation of transcription.bZIP transcription factor family | 2 | Expressed protein ; supported by cDNA: gi_15451129_gb_AY054645.1_ |
AT3G54150 | A0A1I9LLF7 | 33.99 | development.unspecified | 5.7 | embryonic abundant protein -like embryonic abundant protein EMB34, Picea glauca, PIR:T09281; supported by full-length cDNA: Ceres: 6529. |
AT3G54420 | Q9M2U5 | 20.1 | stress.biotic | 4.2 | class IV chitinase (CHIV) |
AT3G53810 | Q9M345 | 30.2.19 | signalling.receptor kinases.legume-lectin | 2.6 | serine/threonine-specific kinase like protein serine/threonine-specific kinase (EC 2.7.1.-) precursor - Arabidopsis thaliana, PIR:S68589 |
AT3G53990 | Q8LC99 | 20.2.2 | stress.abiotic.cold | 2.2 | hypothetical protein ER6 protein - Lycopersicon esculentum, EMBL:AF096262; supported by full-length cDNA: Ceres: 269951. |
AT3G53660 | #N/A | #N/A | #N/A | 3.3 | putative protein predicted protein, Arabidopsis thaliana |
AT3G53670 | #N/A | 35.2 | not assigned.unknown | 2.2 | putative protein predicted protein, Arabidopsis thaliana |
AT3G53150 | Q9SCP6 | 26.2 | misc.UDP glucosyl and glucoronyl transferases | 3.4 | glucosyltransferase - like protein glucosyltransferase IS10a, salicylate-induced, Nicotiana tabacum, PIR:T03745 |
AT3G52400 | Q9SVC2 | 31.4 | cell.vesicle transport | 3.8 | syntaxin-like protein synt4 ;supported by full-length cDNA: Ceres:37248. |
AT3G52430 | Q9S745 | 20.1 | stress.biotic | 2.6 | putative protein other hypothetical proteins in Arabidopsis thaliana; supported by cDNA: gi_6457330_gb_AF188329.1_AF188329 |
AT3G51330 | A0A1I9LM46 | 29.5.4 | protein.degradation.aspartate protease | 2.4 | putative protein several hypothetical proteins - Arabidopsis thaliana; supported by cDNA: gi_15010763_gb_AY045683.1_ |