Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT3G59080 | Q9LYS8 | 27.3.99 | RNA.regulation of transcription.unclassified | 2.8 | putative protein CND41, chloroplast nucleoid DNA binding protein - Nicotiana tabacum, EMBL:D26015; supported by cDNA: gi_15983375_gb_AF424562.1_AF424562 |
AT3G57630 | Q6NKR6 | 26.2 | misc.UDP glucosyl and glucoronyl transferases | 2.1 | putative protein DOC4, Mus musculus, AF059485 |
AT3G57280 | Q93V66 | 35.2 | not assigned.unknown | 2.2 | hypothetical protein ;supported by full-length cDNA: Ceres:14487. |
AT3G57550 | Q9M682 | 23.4.2 | nucleotide metabolism.phosphotransfer and pyrophosphatases.guanylate kinase | 3.4 | guanylate kinase-like protein guanylate kinase - Mus musculus, TREMBL:MMU53514_1; supported by cDNA: gi_7861797_gb_AF204676.1_AF204676 |
AT3G57240 | F4J270 | 26.4.1 | misc.beta 1,3 glucan hydrolases.glucan endo-1,3-beta-glucosidase | 6.5 | beta-1,3-glucanase |
AT3G55980 | Q93ZS9 | 27.3.12 | RNA.regulation of transcription.C3H zinc finger family | 2.2 | putative protein zinc finger transcription factor (PEI1), Arabidopsis thaliana, EMBL:AF050463; supported by cDNA: gi_15810486_gb_AY056282.1_ |
AT3G55950 | Q9LY50 | 30.2.26 | signalling.receptor kinases.crinkly like | 6.6 | receptor kinase - like protein receptor kinase homolog CRINKLY4, maize, PIR:T04108 |
AT3G55840 | Q9LY61 | 35.2 | not assigned.unknown | 2.8 | nematode resistance protein-like protein Hs1pro-1 nematode resistance gene, Beta procumbens, EMBL:BPU79733;supported by full-length cDNA: Ceres:149697. |
AT3G55410 | F4IWV2 | 8.1.5 | TCA / org transformation.TCA.2-oxoglutarate dehydrogenase | 2.1 | 2-oxoglutarate dehydrogenase, E1 subunit - like protein 2-oxoglutarate dehydrogenase, E1 subunit, Arabidopsis thaliana, EMBL:ART223802 |
AT3G55450 | Q8H186 | 29.4.1.57 | protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII | 2.4 | serine/threonine-specific protein kinase -like serine/threonine-specific protein kinase NAK, Arabidopsis thaliana, PIR:S38326 |
AT3G55470 | Q9M2T2 | 35.1.19 | not assigned.no ontology.C2 domain-containing protein | 2.3 | elicitor responsive/phloem -like protein FIERG2 protein, Oryza sativa, PIR:T04363 |
AT3G55150 | Q8VY27 | 27.3.99 | RNA.regulation of transcription.unclassified | 2.6 | putative protein tomato leucine zipper-containing protein, Lycopersicon esculentum, PIR:S21495 |