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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT3G59080
Q9LYS8
27.3.99
RNA.regulation of transcription.unclassified
2.8
putative protein CND41, chloroplast nucleoid DNA binding protein - Nicotiana tabacum, EMBL:D26015; supported by cDNA: gi_15983375_gb_AF424562.1_AF424562
AT3G57630
Q6NKR6
26.2
misc.UDP glucosyl and glucoronyl transferases
2.1
putative protein DOC4, Mus musculus, AF059485
AT3G57280
Q93V66
35.2
not assigned.unknown
2.2
hypothetical protein ;supported by full-length cDNA: Ceres:14487.
AT3G57550
Q9M682
23.4.2
nucleotide metabolism.phosphotransfer and pyrophosphatases.guanylate kinase
3.4
guanylate kinase-like protein guanylate kinase - Mus musculus, TREMBL:MMU53514_1; supported by cDNA: gi_7861797_gb_AF204676.1_AF204676
AT3G57240
F4J270
26.4.1
misc.beta 1,3 glucan hydrolases.glucan endo-1,3-beta-glucosidase
6.5
beta-1,3-glucanase
AT3G55980
Q93ZS9
27.3.12
RNA.regulation of transcription.C3H zinc finger family
2.2
putative protein zinc finger transcription factor (PEI1), Arabidopsis thaliana, EMBL:AF050463; supported by cDNA: gi_15810486_gb_AY056282.1_
AT3G55950
Q9LY50
30.2.26
signalling.receptor kinases.crinkly like
6.6
receptor kinase - like protein receptor kinase homolog CRINKLY4, maize, PIR:T04108
AT3G55840
Q9LY61
35.2
not assigned.unknown
2.8
nematode resistance protein-like protein Hs1pro-1 nematode resistance gene, Beta procumbens, EMBL:BPU79733;supported by full-length cDNA: Ceres:149697.
AT3G55410
F4IWV2
8.1.5
TCA / org transformation.TCA.2-oxoglutarate dehydrogenase
2.1
2-oxoglutarate dehydrogenase, E1 subunit - like protein 2-oxoglutarate dehydrogenase, E1 subunit, Arabidopsis thaliana, EMBL:ART223802
AT3G55450
Q8H186
29.4.1.57
protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII
2.4
serine/threonine-specific protein kinase -like serine/threonine-specific protein kinase NAK, Arabidopsis thaliana, PIR:S38326
AT3G55470
Q9M2T2
35.1.19
not assigned.no ontology.C2 domain-containing protein
2.3
elicitor responsive/phloem -like protein FIERG2 protein, Oryza sativa, PIR:T04363
AT3G55150
Q8VY27
27.3.99
RNA.regulation of transcription.unclassified
2.6
putative protein tomato leucine zipper-containing protein, Lycopersicon esculentum, PIR:S21495
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