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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT3G62770
Q93VB2
34.99
transport.misc
2
putative protein putative proteins - different species; supported by cDNA: gi_14517419_gb_AY039545.1_
AT3G62950
Q9LYC6
21.4
redox.glutaredoxins
2.3
glutaredoxin -like protein glutaredoxin, castor bean, PIR:S54825
AT3G62150
Q9M1Q9
34.16
transport.ABC transporters and multidrug resistance systems
3.6
P-glycoprotein-like proetin P-glycoprotein-2 - Arabidopsis thaliana, EMBL:Y10228
AT3G61630
Q9M374
27.3.3
RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family
2.1
putative protein transcription factor Pti6 - Lycopersicon esculentum, PIR:T07728;supported by full-length cDNA: Ceres:100688.
AT3G60420
F4JBT8
35.2
not assigned.unknown
2.1
putative protein prib5, Ribes nigrum, EMBL:RNI7578;supported by full-length cDNA: Ceres:31361.
AT3G60260
Q8VZ78
35.1
not assigned.no ontology
3.9
putative protein various predicted proteins, Arabidopsis thaliana;supported by full-length cDNA: Ceres:104796.
AT3G60470
Q9M212
35.2
not assigned.unknown
2.4
putative protein various predicted proteins, Arabidopsis thaliana
AT3G60540
Q9M206
29.3.4.99
protein.targeting.secretory pathway.unspecified
2.2
transport protein subunit - like S61B_ARATH PROTEIN TRANSPORT PROTEIN SEC61 BETA SUBUNIT, Arabidopsis thaliana, SWISSPROT:S61B_ARATH
AT3G60120
Q9M1D1
26.3
misc.gluco-, galacto- and mannosidases
5.7
beta-glucosidase-like protein several beta-glucosidases - different species
AT3G60200
Q9M1C3
35.2
not assigned.unknown
2.4
putative protein hypothetical proteins At2g44600 - Arabidopsis thaliana, EMBL:AAC27462
AT3G59660
Q8W4D4
35.1.19
not assigned.no ontology.C2 domain-containing protein
3.2
putative protein other hypothetical proteins
AT3G59700
Q96285
30.2.19
signalling.receptor kinases.legume-lectin
2.3
serine/threonine-specific kinase lecRK1 precursor,lectin receptor-like
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