Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT3G62770 | Q93VB2 | 34.99 | transport.misc | 2 | putative protein putative proteins - different species; supported by cDNA: gi_14517419_gb_AY039545.1_ |
AT3G62950 | Q9LYC6 | 21.4 | redox.glutaredoxins | 2.3 | glutaredoxin -like protein glutaredoxin, castor bean, PIR:S54825 |
AT3G62150 | Q9M1Q9 | 34.16 | transport.ABC transporters and multidrug resistance systems | 3.6 | P-glycoprotein-like proetin P-glycoprotein-2 - Arabidopsis thaliana, EMBL:Y10228 |
AT3G61630 | Q9M374 | 27.3.3 | RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family | 2.1 | putative protein transcription factor Pti6 - Lycopersicon esculentum, PIR:T07728;supported by full-length cDNA: Ceres:100688. |
AT3G60420 | F4JBT8 | 35.2 | not assigned.unknown | 2.1 | putative protein prib5, Ribes nigrum, EMBL:RNI7578;supported by full-length cDNA: Ceres:31361. |
AT3G60260 | Q8VZ78 | 35.1 | not assigned.no ontology | 3.9 | putative protein various predicted proteins, Arabidopsis thaliana;supported by full-length cDNA: Ceres:104796. |
AT3G60470 | Q9M212 | 35.2 | not assigned.unknown | 2.4 | putative protein various predicted proteins, Arabidopsis thaliana |
AT3G60540 | Q9M206 | 29.3.4.99 | protein.targeting.secretory pathway.unspecified | 2.2 | transport protein subunit - like S61B_ARATH PROTEIN TRANSPORT PROTEIN SEC61 BETA SUBUNIT, Arabidopsis thaliana, SWISSPROT:S61B_ARATH |
AT3G60120 | Q9M1D1 | 26.3 | misc.gluco-, galacto- and mannosidases | 5.7 | beta-glucosidase-like protein several beta-glucosidases - different species |
AT3G60200 | Q9M1C3 | 35.2 | not assigned.unknown | 2.4 | putative protein hypothetical proteins At2g44600 - Arabidopsis thaliana, EMBL:AAC27462 |
AT3G59660 | Q8W4D4 | 35.1.19 | not assigned.no ontology.C2 domain-containing protein | 3.2 | putative protein other hypothetical proteins |
AT3G59700 | Q96285 | 30.2.19 | signalling.receptor kinases.legume-lectin | 2.3 | serine/threonine-specific kinase lecRK1 precursor,lectin receptor-like |