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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT4G30340
F4JQ95
11.3.5
lipid metabolism.Phospholipid synthesis.diacylglycerol kinase
2.1
putative protein diacylglycerol kinase iota - Homo sapiens,PID:g3676530; supported by cDNA: gi_13430523_gb_AF360174.1_AF360174
AT4G30350
Q9M0C5
20.2.1
stress.abiotic.heat
2.1
putative protein heat shock protein 101 - Triticum aestivum,PID:g4558484
AT4G30640
Q9M096
29.5.11.4.3.2
protein.degradation.ubiquitin.E3.SCF.FBOX
2.1
F-box protein family, AtFBL19 contains similarity to SKP1 interacting partner 1 GI:10716947 from [Arabidopsis thaliana]
AT4G30060
Q8W4E9
35.2
not assigned.unknown
3.7
putative protein several hypothetical proteins - Arabidopsis thaliana
AT4G29520
Q9SU93
35.2
not assigned.unknown
3.1
putative protein ;supported by full-length cDNA: Ceres:142647.
AT5G02780
Q6NLB0
26.9
misc.glutathione S transferases
11.5
putative protein In2, Zea mays, EMBL:X58573
AT5G02100
Q9LZM1
31.4
cell.vesicle transport
2.3
putative protein oxysterol-binding protein - Mus musculus, EMBL:AB017026; supported by cDNA: gi_15292810_gb_AY050839.1_
AT5G01540
Q9M021
30.2.99
signalling.receptor kinases.misc
3.2
receptor like protein kinase receptor like protein kinase - Arabidopsis thaliana, EMBL:ATLECGENE; supported by cDNA: gi_13605542_gb_AF361597.1_AF361597
AT5G01950
F4KAX4
30.2.8.1
signalling.receptor kinases.leucine rich repeat VIII.VIII-1
2.2
putative protein receptor protein kinases
AT5G01210
Q9LFB5
16.2
secondary metabolism.phenylpropanoids
3.2
anthranilate N-benzoyltransferase - like protein anthranilate N-benzoyltransferase, clove pink, PIR:T10717; supported by cDNA: gi_15912268_gb_AY056412.1_
AT3G63380
Q9LY77
30.3
signalling.calcium
5.7
Ca2+-transporting ATPase -like protein Ca2+-transporting ATPase, calmodulin-stimulated, wild cabbage, PIR:T14453
AT3G62600
Q9LZK5
20.2.1
stress.abiotic.heat
2.6
putative protein HIRA interacting protein 4 (dnaJ-like) - Homo sapiens, EMBL:AJ001309;supported by full-length cDNA: Ceres:37292.
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