Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT4G30340 | F4JQ95 | 11.3.5 | lipid metabolism.Phospholipid synthesis.diacylglycerol kinase | 2.1 | putative protein diacylglycerol kinase iota - Homo sapiens,PID:g3676530; supported by cDNA: gi_13430523_gb_AF360174.1_AF360174 |
AT4G30350 | Q9M0C5 | 20.2.1 | stress.abiotic.heat | 2.1 | putative protein heat shock protein 101 - Triticum aestivum,PID:g4558484 |
AT4G30640 | Q9M096 | 29.5.11.4.3.2 | protein.degradation.ubiquitin.E3.SCF.FBOX | 2.1 | F-box protein family, AtFBL19 contains similarity to SKP1 interacting partner 1 GI:10716947 from [Arabidopsis thaliana] |
AT4G30060 | Q8W4E9 | 35.2 | not assigned.unknown | 3.7 | putative protein several hypothetical proteins - Arabidopsis thaliana |
AT4G29520 | Q9SU93 | 35.2 | not assigned.unknown | 3.1 | putative protein ;supported by full-length cDNA: Ceres:142647. |
AT5G02780 | Q6NLB0 | 26.9 | misc.glutathione S transferases | 11.5 | putative protein In2, Zea mays, EMBL:X58573 |
AT5G02100 | Q9LZM1 | 31.4 | cell.vesicle transport | 2.3 | putative protein oxysterol-binding protein - Mus musculus, EMBL:AB017026; supported by cDNA: gi_15292810_gb_AY050839.1_ |
AT5G01540 | Q9M021 | 30.2.99 | signalling.receptor kinases.misc | 3.2 | receptor like protein kinase receptor like protein kinase - Arabidopsis thaliana, EMBL:ATLECGENE; supported by cDNA: gi_13605542_gb_AF361597.1_AF361597 |
AT5G01950 | F4KAX4 | 30.2.8.1 | signalling.receptor kinases.leucine rich repeat VIII.VIII-1 | 2.2 | putative protein receptor protein kinases |
AT5G01210 | Q9LFB5 | 16.2 | secondary metabolism.phenylpropanoids | 3.2 | anthranilate N-benzoyltransferase - like protein anthranilate N-benzoyltransferase, clove pink, PIR:T10717; supported by cDNA: gi_15912268_gb_AY056412.1_ |
AT3G63380 | Q9LY77 | 30.3 | signalling.calcium | 5.7 | Ca2+-transporting ATPase -like protein Ca2+-transporting ATPase, calmodulin-stimulated, wild cabbage, PIR:T14453 |
AT3G62600 | Q9LZK5 | 20.2.1 | stress.abiotic.heat | 2.6 | putative protein HIRA interacting protein 4 (dnaJ-like) - Homo sapiens, EMBL:AJ001309;supported by full-length cDNA: Ceres:37292. |