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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT4G37640
O81108
30.3
signalling.calcium
2.7
plasma membrane-type calcium ATPase (ACA2) ; supported by cDNA: gi_3335059_gb_AF025842.1_AF025842
AT4G36030
#N/A
35.1.3
not assigned.no ontology.armadillo/beta-catenin repeat family protein
2.4
putative protein unknown protein Arabidopsis thaliana, PATX:E248475
AT4G35630
Q96255
13.1.5.1.2
amino acid metabolism.synthesis.serine-glycine-cysteine group.serine.phosphoserine aminotransferase
3.5
phosphoserine aminotransferase ;supported by full-length cDNA: Ceres:34272.
AT4G35110
A8MQE1
35.2
not assigned.unknown
4.1
putative protein pEARLI 4, Arabidopsis thaliana, PATCHX:G871782; supported by cDNA: gi_14326526_gb_AF385717.1_AF385717
AT4G35180
Q84WE9
34.3
transport.amino acids
4.4
amino acid permease - like protein Lily mRNA, Lilium longiflorum, gb:D21814;supported by full-length cDNA: Ceres:36461.
AT4G34135
Q94C57
16.8.4.2
secondary metabolism.flavonoids.flavonols.flavonol 3-O-glycosyltransferase
2.7
glucosyltransferase -like protein immediate-early salicylate-induced glucosyltransferase, Nicotiana tabacum, PIR2:T03747;supported by cDNA gi:14334981
AT4G33920
O81760
29.4
protein.postranslational modification
2.3
putative protein protein phosphatase Wip1, Homo sapiens, PID:g2218063;supported by full-length cDNA: Ceres:40123.
AT4G33430
Q94F62
17.3.2.99
hormone metabolism.brassinosteroid.signal transduction.other
2.4
somatic embryogenesis receptor-like kinase -like protein somatic embryogenesis receptor-like kinase -Daucus carota,PID:g2224911; supported by cDNA: gi_14573458_gb_AF384970.1_AF384970
AT4G33050
O82645
30.3
signalling.calcium
3.1
putative protein
AT4G31860
Q9SZ53
29.4
protein.postranslational modification
2.3
protein phosphatase 2C - like protein protein phosphatase 2C, Schizosaccharomyces pombe, PIR2:S54297; supported by cDNA: gi_16209697_gb_AY057611.1_
AT4G31800
Q9C5T4
27.3.32
RNA.regulation of transcription.WRKY domain transcription factor family
2.1
Expressed protein ; supported by full-length cDNA: Ceres: 40692.
AT4G31080
O64383
35.2
not assigned.unknown
2.2
putative protein
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