Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT4G37640 | O81108 | 30.3 | signalling.calcium | 2.7 | plasma membrane-type calcium ATPase (ACA2) ; supported by cDNA: gi_3335059_gb_AF025842.1_AF025842 |
AT4G36030 | #N/A | 35.1.3 | not assigned.no ontology.armadillo/beta-catenin repeat family protein | 2.4 | putative protein unknown protein Arabidopsis thaliana, PATX:E248475 |
AT4G35630 | Q96255 | 13.1.5.1.2 | amino acid metabolism.synthesis.serine-glycine-cysteine group.serine.phosphoserine aminotransferase | 3.5 | phosphoserine aminotransferase ;supported by full-length cDNA: Ceres:34272. |
AT4G35110 | A8MQE1 | 35.2 | not assigned.unknown | 4.1 | putative protein pEARLI 4, Arabidopsis thaliana, PATCHX:G871782; supported by cDNA: gi_14326526_gb_AF385717.1_AF385717 |
AT4G35180 | Q84WE9 | 34.3 | transport.amino acids | 4.4 | amino acid permease - like protein Lily mRNA, Lilium longiflorum, gb:D21814;supported by full-length cDNA: Ceres:36461. |
AT4G34135 | Q94C57 | 16.8.4.2 | secondary metabolism.flavonoids.flavonols.flavonol 3-O-glycosyltransferase | 2.7 | glucosyltransferase -like protein immediate-early salicylate-induced glucosyltransferase, Nicotiana tabacum, PIR2:T03747;supported by cDNA gi:14334981 |
AT4G33920 | O81760 | 29.4 | protein.postranslational modification | 2.3 | putative protein protein phosphatase Wip1, Homo sapiens, PID:g2218063;supported by full-length cDNA: Ceres:40123. |
AT4G33430 | Q94F62 | 17.3.2.99 | hormone metabolism.brassinosteroid.signal transduction.other | 2.4 | somatic embryogenesis receptor-like kinase -like protein somatic embryogenesis receptor-like kinase -Daucus carota,PID:g2224911; supported by cDNA: gi_14573458_gb_AF384970.1_AF384970 |
AT4G33050 | O82645 | 30.3 | signalling.calcium | 3.1 | putative protein |
AT4G31860 | Q9SZ53 | 29.4 | protein.postranslational modification | 2.3 | protein phosphatase 2C - like protein protein phosphatase 2C, Schizosaccharomyces pombe, PIR2:S54297; supported by cDNA: gi_16209697_gb_AY057611.1_ |
AT4G31800 | Q9C5T4 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 2.1 | Expressed protein ; supported by full-length cDNA: Ceres: 40692. |
AT4G31080 | O64383 | 35.2 | not assigned.unknown | 2.2 | putative protein |