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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT4G39820
O65669
35.2
not assigned.unknown
2.3
hypothetical protein
AT4G39830
A0A1P8B4N7
21.2.1
redox.ascorbate and glutathione.ascorbate
5
putative L-ascorbate oxidase L-ascorbate oxidase, Cucumis sativus, PIR1:KSKVAO
AT4G39390
Q8RWW7
34.11
transport.NDP-sugars at the ER
2.5
putative protein predicted proteins, Arabidopsis thaliana;supported by full-length cDNA: Ceres:35002.
AT4G39670
Q8L7U7
35.2
not assigned.unknown
6.6
putative protein
AT4G39030
Q945F0
20.1
stress.biotic
7.7
putative protein DNA damage-inducible protein - Synechocystis sp.,PIR2:S77364
AT4G39230
Q9T030
16.8.5.1
secondary metabolism.flavonoids.isoflavones.isoflavone reductase
3.9
NAD(P)H oxidoreductase, isoflavone reductase - like protein Pyrc2, Pyrus communis, AF071477
AT4G39270
A0A1P8B6S7
30.2.14
signalling.receptor kinases.leucine rich repeat XIV
4.4
receptor protein kinase - like protein receptor protein kinase erecta, Arabidopsis thaliana
AT4G38550
Q9SZN4
35.2
not assigned.unknown
2
Phospholipase like protein Arabidopsis thaliana pEARLI 4 mRNA, PID:g871782
AT4G38560
Q0WV01
35.2
not assigned.unknown
2.1
Phospholipase like protein Arabidopsis thaliana pEARLI 4 mRNA, PID:g871782
AT4G38540
O81816
26.7
misc.oxidases - copper, flavone etc
3.6
monooxygenase 2 (MO2)
AT4G37290
F4JRC5
35.2
not assigned.unknown
5.5
hypothetical protein ;supported by full-length cDNA: Ceres:41783.
AT4G37370
Q9SZT7
26.1
misc.cytochrome P450
8.5
cytochrome P450 - like protein cytochrome P450, Glycyrrhiza echinata, AB001379;supported by full-length cDNA: Ceres:253698.
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