Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT4G39820 | O65669 | 35.2 | not assigned.unknown | 2.3 | hypothetical protein |
AT4G39830 | A0A1P8B4N7 | 21.2.1 | redox.ascorbate and glutathione.ascorbate | 5 | putative L-ascorbate oxidase L-ascorbate oxidase, Cucumis sativus, PIR1:KSKVAO |
AT4G39390 | Q8RWW7 | 34.11 | transport.NDP-sugars at the ER | 2.5 | putative protein predicted proteins, Arabidopsis thaliana;supported by full-length cDNA: Ceres:35002. |
AT4G39670 | Q8L7U7 | 35.2 | not assigned.unknown | 6.6 | putative protein |
AT4G39030 | Q945F0 | 20.1 | stress.biotic | 7.7 | putative protein DNA damage-inducible protein - Synechocystis sp.,PIR2:S77364 |
AT4G39230 | Q9T030 | 16.8.5.1 | secondary metabolism.flavonoids.isoflavones.isoflavone reductase | 3.9 | NAD(P)H oxidoreductase, isoflavone reductase - like protein Pyrc2, Pyrus communis, AF071477 |
AT4G39270 | A0A1P8B6S7 | 30.2.14 | signalling.receptor kinases.leucine rich repeat XIV | 4.4 | receptor protein kinase - like protein receptor protein kinase erecta, Arabidopsis thaliana |
AT4G38550 | Q9SZN4 | 35.2 | not assigned.unknown | 2 | Phospholipase like protein Arabidopsis thaliana pEARLI 4 mRNA, PID:g871782 |
AT4G38560 | Q0WV01 | 35.2 | not assigned.unknown | 2.1 | Phospholipase like protein Arabidopsis thaliana pEARLI 4 mRNA, PID:g871782 |
AT4G38540 | O81816 | 26.7 | misc.oxidases - copper, flavone etc | 3.6 | monooxygenase 2 (MO2) |
AT4G37290 | F4JRC5 | 35.2 | not assigned.unknown | 5.5 | hypothetical protein ;supported by full-length cDNA: Ceres:41783. |
AT4G37370 | Q9SZT7 | 26.1 | misc.cytochrome P450 | 8.5 | cytochrome P450 - like protein cytochrome P450, Glycyrrhiza echinata, AB001379;supported by full-length cDNA: Ceres:253698. |