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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT3G47090
Q9SD64
30.2.12
signalling.receptor kinases.leucine rich repeat XII
2.5
receptor kinase-like protein receptor kinase-like protein (Xa21), Oryza longistaminata, U72725
AT3G46930
A0A1I9LS71
29.4
protein.postranslational modification
2.2
protein kinase 6-like protein protein kinase 6 - Glycine max,PIR2:S29851
AT3G46280
Q8RXT6
30.2.99
signalling.receptor kinases.misc
2.3
putative protein serine/threonine-specific protein kinase (EC 2.7.1.-) lrrpk, Arabidopsis thaliana, PIR:T08975
AT3G46110
Q8GY65
35.2
not assigned.unknown
3.2
putative protein predicted proteins, Arabidopsis thaliana
AT3G45290
Q94KB9
20.1.3.1
stress.biotic.signalling.MLO-like
2.1
putative protein Mlo-h1 protein - Hordeum vulgare, PIR:T05952; supported by cDNA: gi_14091575_gb_AF369564.1_AF369564
AT3G45650
Q9M1E2
34.13
transport.peptides and oligopeptides
2.4
putative protein different transporter proteins
AT3G45640
Q39023
30.6
signalling.MAP kinases
2
mitogen-activated protein kinase 3 ; supported by cDNA: gi_14423447_gb_AF386961.1_AF386961
AT3G44720
O22241
13.1.6.3.1
amino acid metabolism.synthesis.aromatic aa.phenylalanine.arogenate dehydratase / prephenate dehydratase
2.3
putative chloroplast prephenate dehydratase similar to bacterial PheA gene products
AT3G43210
Q8LNZ2
31.1
cell.organisation
2.1
kinesin -like protein kinesin-like protein ZCF125, Arabidopsis thaliana, EMBL:AB028468
AT4G39890
Q9SMR4
30.5
signalling.G-proteins
2.6
small GTP-binding protein - like SR1 Nt-rab6, Nicotiana tabacum, L29273; supported by cDNA: gi_14423429_gb_AF386952.1_AF386952
AT4G39950
O81346
16.5.1.1.3.1
secondary metabolism.sulfur-containing.glucosinolates.synthesis.indole.CYP79B2 monooxygenase
6.9
cytochrome P450 - like protein cytochrome P450, Sinapis alba, AF069494; supported by cDNA: gi_15028134_gb_AY046017.1_
AT4G39980
P29976
13.1.6.1.1
amino acid metabolism.synthesis.aromatic aa.chorismate.3-deoxy-D-arabino-heptulosonate 7-phosphate synthase
2.7
2-dehydro-3-deoxyphosphoheptonate aldolase ; supported by cDNA: gi_166687_gb_M74819.1_ATHDHS1
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