Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT3G47090 | Q9SD64 | 30.2.12 | signalling.receptor kinases.leucine rich repeat XII | 2.5 | receptor kinase-like protein receptor kinase-like protein (Xa21), Oryza longistaminata, U72725 |
AT3G46930 | A0A1I9LS71 | 29.4 | protein.postranslational modification | 2.2 | protein kinase 6-like protein protein kinase 6 - Glycine max,PIR2:S29851 |
AT3G46280 | Q8RXT6 | 30.2.99 | signalling.receptor kinases.misc | 2.3 | putative protein serine/threonine-specific protein kinase (EC 2.7.1.-) lrrpk, Arabidopsis thaliana, PIR:T08975 |
AT3G46110 | Q8GY65 | 35.2 | not assigned.unknown | 3.2 | putative protein predicted proteins, Arabidopsis thaliana |
AT3G45290 | Q94KB9 | 20.1.3.1 | stress.biotic.signalling.MLO-like | 2.1 | putative protein Mlo-h1 protein - Hordeum vulgare, PIR:T05952; supported by cDNA: gi_14091575_gb_AF369564.1_AF369564 |
AT3G45650 | Q9M1E2 | 34.13 | transport.peptides and oligopeptides | 2.4 | putative protein different transporter proteins |
AT3G45640 | Q39023 | 30.6 | signalling.MAP kinases | 2 | mitogen-activated protein kinase 3 ; supported by cDNA: gi_14423447_gb_AF386961.1_AF386961 |
AT3G44720 | O22241 | 13.1.6.3.1 | amino acid metabolism.synthesis.aromatic aa.phenylalanine.arogenate dehydratase / prephenate dehydratase | 2.3 | putative chloroplast prephenate dehydratase similar to bacterial PheA gene products |
AT3G43210 | Q8LNZ2 | 31.1 | cell.organisation | 2.1 | kinesin -like protein kinesin-like protein ZCF125, Arabidopsis thaliana, EMBL:AB028468 |
AT4G39890 | Q9SMR4 | 30.5 | signalling.G-proteins | 2.6 | small GTP-binding protein - like SR1 Nt-rab6, Nicotiana tabacum, L29273; supported by cDNA: gi_14423429_gb_AF386952.1_AF386952 |
AT4G39950 | O81346 | 16.5.1.1.3.1 | secondary metabolism.sulfur-containing.glucosinolates.synthesis.indole.CYP79B2 monooxygenase | 6.9 | cytochrome P450 - like protein cytochrome P450, Sinapis alba, AF069494; supported by cDNA: gi_15028134_gb_AY046017.1_ |
AT4G39980 | P29976 | 13.1.6.1.1 | amino acid metabolism.synthesis.aromatic aa.chorismate.3-deoxy-D-arabino-heptulosonate 7-phosphate synthase | 2.7 | 2-dehydro-3-deoxyphosphoheptonate aldolase ; supported by cDNA: gi_166687_gb_M74819.1_ATHDHS1 |