Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT4G11890 | Q8GY82 | 29.4.1 | protein.postranslational modification.kinase | 3.3 | protein kinase - like protein KI domain interacting kinase 1 -Zea mays,PIR2:T02053 |
AT4G11360 | Q9SUS5 | 29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING | 2.1 | RING-H2 finger protein RHA1b ;supported by full-length cDNA: Ceres:37097. |
AT4G11370 | Q9SUS4 | 29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING | 16 | RING-H2 finger protein RHA1a -like protein ;supported by full-length cDNA: Ceres:21591. |
AT3G50740 | Q94A84 | 16.2.1 | secondary metabolism.phenylpropanoids.lignin biosynthesis | 3.4 | UTP-glucose glucosyltransferase - like protein UTP-glucose glucosyltransferase, Manihot esculenta, PIR:S41951; supported by cDNA: gi_15146271_gb_AY049277.1_ |
AT3G50260 | Q9SNE1 | 17.5.2 | hormone metabolism.ethylene.signal transduction | 2.1 | putative protein EREBP-3 homolog, Stylosanthes hamata, EMBL:U91982; supported by cDNA: gi_15010555_gb_AY045579.1_ |
AT3G49620 | Q8H113 | 33.99 | development.unspecified | 7.7 | putative protein SRG1 protein - Arabidopsis thaliana, PIR:S44261 |
AT3G49370 | Q9SG12 | 30.3 | signalling.calcium | 2.1 | calcium dependent protein kinase - like strong similarity to calcium dependent protein kinase CP4, Arabidopsis thaliana, EMBL:AF130252 |
AT3G49390 | Q9SG10 | 27.4 | RNA.RNA binding | 2.3 | RNA-binding - like protein RNA-binding protein RBP37, Arabidopsis thaliana, PIR:T04196 |
AT3G48850 | Q9M2Z8 | 34.9 | transport.metabolite transporters at the mitochondrial membrane | 2.3 | mitochondrial phosphate transporter mitochondrial phosphate transporter - Zea mays, EMBL:AB016064 |
AT3G48890 | Q9M2Z4 | 21.2 | redox.ascorbate and glutathione | 2.1 | putative progesterone-binding protein homolog Atmp2 ; supported by cDNA: gi_4960153_gb_AF153283.1_AF153283 |
AT3G47540 | Q9SN84 | 20.1 | stress.biotic | 2.2 | endochitinase-like protein BASIC ENDOCHITINASE CHB4 PRECURSOR - Brassica napus, SWISSPROT:CHI4_BRANA |
AT3G47550 | F4JBK9 | 29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING | 3.1 | putative protein PIT1 - Arabidopsis thaliana, GB: AF130849 |