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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT4G11890
Q8GY82
29.4.1
protein.postranslational modification.kinase
3.3
protein kinase - like protein KI domain interacting kinase 1 -Zea mays,PIR2:T02053
AT4G11360
Q9SUS5
29.5.11.4.2
protein.degradation.ubiquitin.E3.RING
2.1
RING-H2 finger protein RHA1b ;supported by full-length cDNA: Ceres:37097.
AT4G11370
Q9SUS4
29.5.11.4.2
protein.degradation.ubiquitin.E3.RING
16
RING-H2 finger protein RHA1a -like protein ;supported by full-length cDNA: Ceres:21591.
AT3G50740
Q94A84
16.2.1
secondary metabolism.phenylpropanoids.lignin biosynthesis
3.4
UTP-glucose glucosyltransferase - like protein UTP-glucose glucosyltransferase, Manihot esculenta, PIR:S41951; supported by cDNA: gi_15146271_gb_AY049277.1_
AT3G50260
Q9SNE1
17.5.2
hormone metabolism.ethylene.signal transduction
2.1
putative protein EREBP-3 homolog, Stylosanthes hamata, EMBL:U91982; supported by cDNA: gi_15010555_gb_AY045579.1_
AT3G49620
Q8H113
33.99
development.unspecified
7.7
putative protein SRG1 protein - Arabidopsis thaliana, PIR:S44261
AT3G49370
Q9SG12
30.3
signalling.calcium
2.1
calcium dependent protein kinase - like strong similarity to calcium dependent protein kinase CP4, Arabidopsis thaliana, EMBL:AF130252
AT3G49390
Q9SG10
27.4
RNA.RNA binding
2.3
RNA-binding - like protein RNA-binding protein RBP37, Arabidopsis thaliana, PIR:T04196
AT3G48850
Q9M2Z8
34.9
transport.metabolite transporters at the mitochondrial membrane
2.3
mitochondrial phosphate transporter mitochondrial phosphate transporter - Zea mays, EMBL:AB016064
AT3G48890
Q9M2Z4
21.2
redox.ascorbate and glutathione
2.1
putative progesterone-binding protein homolog Atmp2 ; supported by cDNA: gi_4960153_gb_AF153283.1_AF153283
AT3G47540
Q9SN84
20.1
stress.biotic
2.2
endochitinase-like protein BASIC ENDOCHITINASE CHB4 PRECURSOR - Brassica napus, SWISSPROT:CHI4_BRANA
AT3G47550
F4JBK9
29.5.11.4.2
protein.degradation.ubiquitin.E3.RING
3.1
putative protein PIT1 - Arabidopsis thaliana, GB: AF130849
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