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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT4G20000
#N/A
35.1
not assigned.no ontology
4.7
hypothetical protein
AT4G19880
Q8H121
26.9
misc.glutathione S transferases
2
putative protein various predicted proteins
AT4G19370
O65708
35.2
not assigned.unknown
2.2
hypothetical protein
AT4G19430
Q67Y03
35.2
not assigned.unknown
2.4
expressed protein supported by cDNA: Ceres:13917.
AT4G18880
O49403
20.2.1
stress.abiotic.heat
2.5
heat shock transcription factor - like protein heat shock transcription factor, Zea mays, PIR2:S61448
AT4G18990
Q8L7H3
10.7
cell wall.modification
2.1
xyloglucan endo-transglycosylase - like protein xyloglucan endo-transglycosylase related protein XTR-4, arabidopsis thaliana, PIR2:S71223
AT4G18430
O49513
30.5
signalling.G-proteins
2.8
membrane-bound small GTP-binding - like protein GTP-binding protein - Pisum sativum, PATCHX:D1002602 and SR1 Nt-rab11b, Nicotiana tabacum, PATCHX:G623578
AT4G13180
Q9SVQ9
26.22
misc.short chain dehydrogenase/reductase (SDR)
2.8
short-chain alcohol dehydrogenase like protein short-chain alcohol dehydrogenase -Picea abies, PIR2:S34678;supported by full-length cDNA: Ceres:748.
AT4G12720
Q9SU14
23.3.3
nucleotide metabolism.salvage.NUDIX hydrolases
2.5
growth factor like protein antisense basic fibroblast growth factor GFG - Rattus norvegicus, PID:g1518635;supported by full-length cDNA: Ceres:148575.
AT4G12470
Q9SU35
26.21
misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein
2.3
pEARLI 1-like protein Arabidopsis thaliana pEARLI 1 mRNA, PID:g871780
AT4G11850
Q9T053
11.9.3.1
lipid metabolism.lipid degradation.lysophospholipases.phospholipase D
2.8
putative phospholipase D-gamma phospholipase D-gamma - Arabidopsis thaliana,PID:g2653885; supported by cDNA: gi_2653884_gb_AF027408.1_AF027408
AT4G12070
Q9SZ72
35.2
not assigned.unknown
2.4
putative protein other predicted proteins, Arabidopsis thaliana;supported by full-length cDNA: Ceres:34781.
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