Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT4G20000 | #N/A | 35.1 | not assigned.no ontology | 4.7 | hypothetical protein |
AT4G19880 | Q8H121 | 26.9 | misc.glutathione S transferases | 2 | putative protein various predicted proteins |
AT4G19370 | O65708 | 35.2 | not assigned.unknown | 2.2 | hypothetical protein |
AT4G19430 | Q67Y03 | 35.2 | not assigned.unknown | 2.4 | expressed protein supported by cDNA: Ceres:13917. |
AT4G18880 | O49403 | 20.2.1 | stress.abiotic.heat | 2.5 | heat shock transcription factor - like protein heat shock transcription factor, Zea mays, PIR2:S61448 |
AT4G18990 | Q8L7H3 | 10.7 | cell wall.modification | 2.1 | xyloglucan endo-transglycosylase - like protein xyloglucan endo-transglycosylase related protein XTR-4, arabidopsis thaliana, PIR2:S71223 |
AT4G18430 | O49513 | 30.5 | signalling.G-proteins | 2.8 | membrane-bound small GTP-binding - like protein GTP-binding protein - Pisum sativum, PATCHX:D1002602 and SR1 Nt-rab11b, Nicotiana tabacum, PATCHX:G623578 |
AT4G13180 | Q9SVQ9 | 26.22 | misc.short chain dehydrogenase/reductase (SDR) | 2.8 | short-chain alcohol dehydrogenase like protein short-chain alcohol dehydrogenase -Picea abies, PIR2:S34678;supported by full-length cDNA: Ceres:748. |
AT4G12720 | Q9SU14 | 23.3.3 | nucleotide metabolism.salvage.NUDIX hydrolases | 2.5 | growth factor like protein antisense basic fibroblast growth factor GFG - Rattus norvegicus, PID:g1518635;supported by full-length cDNA: Ceres:148575. |
AT4G12470 | Q9SU35 | 26.21 | misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | 2.3 | pEARLI 1-like protein Arabidopsis thaliana pEARLI 1 mRNA, PID:g871780 |
AT4G11850 | Q9T053 | 11.9.3.1 | lipid metabolism.lipid degradation.lysophospholipases.phospholipase D | 2.8 | putative phospholipase D-gamma phospholipase D-gamma - Arabidopsis thaliana,PID:g2653885; supported by cDNA: gi_2653884_gb_AF027408.1_AF027408 |
AT4G12070 | Q9SZ72 | 35.2 | not assigned.unknown | 2.4 | putative protein other predicted proteins, Arabidopsis thaliana;supported by full-length cDNA: Ceres:34781. |