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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT4G23230
Q8W4G6
30.2.17
signalling.receptor kinases.DUF 26
2.1
putative protein S-receptor kinase 8 precursor, Brassica campestris, Pir1:Jc2481
AT4G23280
O65479
30.2.17
signalling.receptor kinases.DUF 26
5.2
serine /threonine kinase - like protein serine /threonine kinase, Brassica oleracea
AT4G23220
Q8H199
30.2.17
signalling.receptor kinases.DUF 26
2.8
serine/threonine kinase - like protein serine/threonine kinase, Brassica oleracea; supported by cDNA: gi_14423417_gb_AF386946.1_AF386946
AT4G23030
O82752
34.16
transport.ABC transporters and multidrug resistance systems
2.1
putative protein
AT4G22780
Q8LJW1
29.2.4
protein.synthesis.elongation
4.2
Translation factor EF-1 alpha - like protein translation factor EF-1 alpha genfamily, Arabidopsis thaliana, PATCHX:G1532164
AT4G22530
Q9SUW6
33.99
development.unspecified
3.8
putative protein embryo-abundant protein (EMB34), Picea glauca, PID:g1350531
AT4G21830
Q8VY86
20.2
stress.abiotic
4.5
putative protein CGI-131 protein, Homo sapiens, AF151889;supported by full-length cDNA: Ceres:14645.
AT4G21850
Q84JT6
20.2
stress.abiotic
3.2
putative protein CGI-131 protein, Homo sapiens, AF151889;supported by full-length cDNA: Ceres:24573.
AT4G21390
O81906
30.2.24
signalling.receptor kinases.S-locus glycoprotein like
8
serine/threonine kinase - like protein serine/threonine kinase BRLK, Brassica oleracea, gb:Y12531
AT4G21400
O65405
30.2.17
signalling.receptor kinases.DUF 26
2.7
serine/threonine protein kinase - like protein receptor protein kinase (IRK1), Ipomoea trifida, gb:U20948
AT4G20830
Q9SVG4
26.8
misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases
5.9
reticuline oxidase -like protein reticuline oxidase, Eschscholzia californica, PIR:A41533; supported by cDNA: gi_15983492_gb_AF424621.1_AF424621
AT4G20780
Q9SVG9
30.3
signalling.calcium
2.4
calcium-binding protein - like calcium-binding protein, Solanum tuberosum, gb:L02830
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