Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT4G23230 | Q8W4G6 | 30.2.17 | signalling.receptor kinases.DUF 26 | 2.1 | putative protein S-receptor kinase 8 precursor, Brassica campestris, Pir1:Jc2481 |
AT4G23280 | O65479 | 30.2.17 | signalling.receptor kinases.DUF 26 | 5.2 | serine /threonine kinase - like protein serine /threonine kinase, Brassica oleracea |
AT4G23220 | Q8H199 | 30.2.17 | signalling.receptor kinases.DUF 26 | 2.8 | serine/threonine kinase - like protein serine/threonine kinase, Brassica oleracea; supported by cDNA: gi_14423417_gb_AF386946.1_AF386946 |
AT4G23030 | O82752 | 34.16 | transport.ABC transporters and multidrug resistance systems | 2.1 | putative protein |
AT4G22780 | Q8LJW1 | 29.2.4 | protein.synthesis.elongation | 4.2 | Translation factor EF-1 alpha - like protein translation factor EF-1 alpha genfamily, Arabidopsis thaliana, PATCHX:G1532164 |
AT4G22530 | Q9SUW6 | 33.99 | development.unspecified | 3.8 | putative protein embryo-abundant protein (EMB34), Picea glauca, PID:g1350531 |
AT4G21830 | Q8VY86 | 20.2 | stress.abiotic | 4.5 | putative protein CGI-131 protein, Homo sapiens, AF151889;supported by full-length cDNA: Ceres:14645. |
AT4G21850 | Q84JT6 | 20.2 | stress.abiotic | 3.2 | putative protein CGI-131 protein, Homo sapiens, AF151889;supported by full-length cDNA: Ceres:24573. |
AT4G21390 | O81906 | 30.2.24 | signalling.receptor kinases.S-locus glycoprotein like | 8 | serine/threonine kinase - like protein serine/threonine kinase BRLK, Brassica oleracea, gb:Y12531 |
AT4G21400 | O65405 | 30.2.17 | signalling.receptor kinases.DUF 26 | 2.7 | serine/threonine protein kinase - like protein receptor protein kinase (IRK1), Ipomoea trifida, gb:U20948 |
AT4G20830 | Q9SVG4 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | 5.9 | reticuline oxidase -like protein reticuline oxidase, Eschscholzia californica, PIR:A41533; supported by cDNA: gi_15983492_gb_AF424621.1_AF424621 |
AT4G20780 | Q9SVG9 | 30.3 | signalling.calcium | 2.4 | calcium-binding protein - like calcium-binding protein, Solanum tuberosum, gb:L02830 |