Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT4G25030 | Q9SW23 | 35.2 | not assigned.unknown | 2.1 | putative protein ;supported by full-length cDNA: Ceres:16463. |
AT4G25230 | Q8VYC8 | 29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING | 2.1 | putative protein |
AT4G24350 | Q67XV5 | 35.1 | not assigned.no ontology | 2.6 | putative protein storage protein - Populus deltoides, PIR2:S31580 |
AT4G24340 | Q9STW0 | 35.1 | not assigned.no ontology | 2.4 | putative protein storage protein - Populus deltoides, PIR2:S31580;supported by full-length cDNA: Ceres:8772. |
AT4G24400 | Q9STV4 | 29.4 | protein.postranslational modification | 2.3 | serine/threonine kinase-like protein serine/threonine kinase - Sorghum bicolor,PID:e1184911; supported by cDNA: gi_14532685_gb_AY039967.1_ |
AT4G24290 | Q9STW5 | 35.2 | not assigned.unknown | 2.4 | putative protein ; supported by cDNA: gi_15810434_gb_AY056256.1_ |
AT4G24000 | Q8VYR4 | 10.2.1 | cell wall.cellulose synthesis.cellulose synthase | 3.2 | putative protein cellulose synthase catalytic subunit, Arabidopsis thaliana, gb:AF027173;supported by full-length cDNA: Ceres:112955. |
AT4G23700 | Q9SUQ7 | 34.12 | transport.metal | 4 | putative Na+/H+-exchanging protein Na+/H+-exchanging protein slr1595 - Synechocystis sp., EMBL:D90902 |
AT4G23610 | Q9SUR5 | 35.2 | not assigned.unknown | 2.6 | hypothetical protein ; supported by cDNA: gi_13937134_gb_AF372921.1_AF372921 |
AT4G23810 | Q9SUP6 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 3.7 | putative protein AR411 - Arabidopsis thaliana (thale cress), PID:g1669603; supported by cDNA: gi_13507100_gb_AF272748.1_AF272748 |
AT4G23190 | Q9ZP16 | 30.2.17 | signalling.receptor kinases.DUF 26 | 10.2 | serine/threonine kinase - like protein serine/threonine kinase, Brassica oleracea |
AT4G23210 | Q0PW40 | 30.2.17 | signalling.receptor kinases.DUF 26 | 2.9 | serine/threonine kinase - like protein serine/threonine kinase, Brassica oleracea |