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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT4G25030
Q9SW23
35.2
not assigned.unknown
2.1
putative protein ;supported by full-length cDNA: Ceres:16463.
AT4G25230
Q8VYC8
29.5.11.4.2
protein.degradation.ubiquitin.E3.RING
2.1
putative protein
AT4G24350
Q67XV5
35.1
not assigned.no ontology
2.6
putative protein storage protein - Populus deltoides, PIR2:S31580
AT4G24340
Q9STW0
35.1
not assigned.no ontology
2.4
putative protein storage protein - Populus deltoides, PIR2:S31580;supported by full-length cDNA: Ceres:8772.
AT4G24400
Q9STV4
29.4
protein.postranslational modification
2.3
serine/threonine kinase-like protein serine/threonine kinase - Sorghum bicolor,PID:e1184911; supported by cDNA: gi_14532685_gb_AY039967.1_
AT4G24290
Q9STW5
35.2
not assigned.unknown
2.4
putative protein ; supported by cDNA: gi_15810434_gb_AY056256.1_
AT4G24000
Q8VYR4
10.2.1
cell wall.cellulose synthesis.cellulose synthase
3.2
putative protein cellulose synthase catalytic subunit, Arabidopsis thaliana, gb:AF027173;supported by full-length cDNA: Ceres:112955.
AT4G23700
Q9SUQ7
34.12
transport.metal
4
putative Na+/H+-exchanging protein Na+/H+-exchanging protein slr1595 - Synechocystis sp., EMBL:D90902
AT4G23610
Q9SUR5
35.2
not assigned.unknown
2.6
hypothetical protein ; supported by cDNA: gi_13937134_gb_AF372921.1_AF372921
AT4G23810
Q9SUP6
27.3.32
RNA.regulation of transcription.WRKY domain transcription factor family
3.7
putative protein AR411 - Arabidopsis thaliana (thale cress), PID:g1669603; supported by cDNA: gi_13507100_gb_AF272748.1_AF272748
AT4G23190
Q9ZP16
30.2.17
signalling.receptor kinases.DUF 26
10.2
serine/threonine kinase - like protein serine/threonine kinase, Brassica oleracea
AT4G23210
Q0PW40
30.2.17
signalling.receptor kinases.DUF 26
2.9
serine/threonine kinase - like protein serine/threonine kinase, Brassica oleracea
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