Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT3G22600 | Q9LJ86 | 26.21 | misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | 3.1 | unknown protein contains Pfam profile:PF00279 LTP:Plant lipid transfer protein family;supported by full-length cDNA: Ceres:19287. |
AT4G29210 | Q9M0G0 | 21.2.2 | redox.ascorbate and glutathione.glutathione | 2.1 | gamma-glutamyltransferase-like protein gamma-glutamyltransferase - Arabidopsis thaliana,PIR2:S58286 |
AT4G29050 | Q9SZD5 | 30.2.19 | signalling.receptor kinases.legume-lectin | 2 | serine threonine-specific kinase like protein serine threonine-specific kinase lecRK1 - Arabidopsis thaliana, PIR2:S68589 |
AT4G28420 | Q67Y55 | 16.1.3 | secondary metabolism.isoprenoids.tocopherol biosynthesis | 4.1 | tyrosine transaminase-like protein tyrosine transaminase (EC 2.6.1.5)-rat, PIR1:XNRTY |
AT4G28460 | Q1PE40 | 35.2 | not assigned.unknown | 2.3 | hypothetical protein |
AT4G27070 | P25269 | 13.1.6.5.5 | amino acid metabolism.synthesis.aromatic aa.tryptophan.tryptophan synthase | 2.8 | tryptophan synthase beta-subunit (TSB2) ;supported by full-length cDNA: Ceres:104687. |
AT4G27300 | O81833 | 30.2.24 | signalling.receptor kinases.S-locus glycoprotein like | 2.3 | putative receptor protein kinase receptor protein kinase, Ipomoea trifida,PID:g836954 |
AT4G26910 | Q8H107 | 35.1 | not assigned.no ontology | 3.4 | putative dihydrolipoamide succinyltransferase dihydrolipoamide succinyltransferase (EC 2.3.1.61) precursor - rat, Pir2:A41015;supported by full-length cDNA: Ceres:101175. |
AT4G26970 | Q94A28 | 8.1.3 | TCA / org transformation.TCA.aconitase | 2 | putative aconitase Pumpkin mRNA for aconitase, Cucurbita sp.,PID:g868003; supported by cDNA: gi_15215803_gb_AY050431.1_ |
AT4G26120 | Q9SZI3 | 31.1 | cell.organisation | 2.2 | NPR1 like protein regulatory protein NPR1 - Arabidopsis thaliana, PID:g1773295 |
AT4G25900 | Q940G5 | 3.5 | minor CHO metabolism.others | 2.4 | possible apospory-associated like protein Pennisetum ciliare possible apospory-associated mRNA clone pSUB C, PID:g549984;supported by full-length cDNA: Ceres:37817. |
AT4G25720 | Q84WV9 | 26.1 | misc.misc2 | 2.5 | glutamine cyclotransferase precursor - like protein glutamine cyclotransferase precursor, Carica papaya, AF061240;supported by full-length cDNA: Ceres:114197. |