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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT3G22600
Q9LJ86
26.21
misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein
3.1
unknown protein contains Pfam profile:PF00279 LTP:Plant lipid transfer protein family;supported by full-length cDNA: Ceres:19287.
AT4G29210
Q9M0G0
21.2.2
redox.ascorbate and glutathione.glutathione
2.1
gamma-glutamyltransferase-like protein gamma-glutamyltransferase - Arabidopsis thaliana,PIR2:S58286
AT4G29050
Q9SZD5
30.2.19
signalling.receptor kinases.legume-lectin
2
serine threonine-specific kinase like protein serine threonine-specific kinase lecRK1 - Arabidopsis thaliana, PIR2:S68589
AT4G28420
Q67Y55
16.1.3
secondary metabolism.isoprenoids.tocopherol biosynthesis
4.1
tyrosine transaminase-like protein tyrosine transaminase (EC 2.6.1.5)-rat, PIR1:XNRTY
AT4G28460
Q1PE40
35.2
not assigned.unknown
2.3
hypothetical protein
AT4G27070
P25269
13.1.6.5.5
amino acid metabolism.synthesis.aromatic aa.tryptophan.tryptophan synthase
2.8
tryptophan synthase beta-subunit (TSB2) ;supported by full-length cDNA: Ceres:104687.
AT4G27300
O81833
30.2.24
signalling.receptor kinases.S-locus glycoprotein like
2.3
putative receptor protein kinase receptor protein kinase, Ipomoea trifida,PID:g836954
AT4G26910
Q8H107
35.1
not assigned.no ontology
3.4
putative dihydrolipoamide succinyltransferase dihydrolipoamide succinyltransferase (EC 2.3.1.61) precursor - rat, Pir2:A41015;supported by full-length cDNA: Ceres:101175.
AT4G26970
Q94A28
8.1.3
TCA / org transformation.TCA.aconitase
2
putative aconitase Pumpkin mRNA for aconitase, Cucurbita sp.,PID:g868003; supported by cDNA: gi_15215803_gb_AY050431.1_
AT4G26120
Q9SZI3
31.1
cell.organisation
2.2
NPR1 like protein regulatory protein NPR1 - Arabidopsis thaliana, PID:g1773295
AT4G25900
Q940G5
3.5
minor CHO metabolism.others
2.4
possible apospory-associated like protein Pennisetum ciliare possible apospory-associated mRNA clone pSUB C, PID:g549984;supported by full-length cDNA: Ceres:37817.
AT4G25720
Q84WV9
26.1
misc.misc2
2.5
glutamine cyclotransferase precursor - like protein glutamine cyclotransferase precursor, Carica papaya, AF061240;supported by full-length cDNA: Ceres:114197.
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