Species & Dataset
Experiment
Foliar ozone injury
-
Arabidopsis thaliana
-
Common name: Thale cress, Mouse-ear cress
-
Family: Brassicaceae
-
-
Cultivar : Columbia (ecotype Col-0)
-
Tissue: Rosettes
-
Ozone concentration: 300 ppb
-
Ozone exposure: 6 hours (0800-1400 h)
-
Platform: Microarray analysis
-
Year of study: 2006
-
Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT1G66690 | Q9C9M2 | 17.8.1 | hormone metabolism.salicylic acid.synthesis-degradation | 9.5 | unknown protein |
AT3G10930 | Q84TK4 | 35.2 | not assigned.unknown | 2.1 | hypothetical protein predicted by genefinder;supported by full-length cDNA: Ceres:12509. |
AT1G36640 | Q9C8F3 | 35.2 | not assigned.unknown | 2.3 | unknown protein |
AT1G66090 | Q9C515 | 20.1.7 | stress.biotic.PR-proteins | 4.8 | disease resistance protein, putative similar to disease resistance protein RPP1-WsA [Arabidopsis thaliana] GI:3860163; supported by full-length cDNA: Ceres: 93530. |
AT3G28210 | Q67YE6 | 27.3.11 | RNA.regulation of transcription.C2H2 zinc finger family | 2.5 | zinc finger protein (PMZ), putative identical to putative zinc finger protein (PMZ) GB:AAD37511 GI:5006473 [Arabidopsis thaliana] |
AT3G28340 | Q9LHD2 | 3.1.1.2 | minor CHO metabolism.raffinose family.galactinol synthases.putative | 2.3 | unknown protein |
AT3G13610 | Q9LHN8 | 28.99 | DNA.unspecified | 3.8 | unknown protein contains similarity to DNA-binding protein zyxin GB:X99063 GI:1430882 from [Mus musculus] |
AT3G25600 | Q9LI84 | 30.3 | signalling.calcium | 2.2 | calmodulin, putative similar to GB:P07463 from [Paramecium tetraurelia] (Cell 62 (1), 165-174 (1990)) |
AT3G25610 | Q9LI83 | 34.1 | transport.p- and v-ATPases | 5.3 | ATPase II, putative similar to GB:AAD34706 from [Homo sapiens] (Biochem. Biophys. Res. Commun. 257 (2), 333-339 (1999)) |
AT3G13790 | Q43866 | 2.2.1.3.2 | major CHO metabolism.degradation.sucrose.invertases.cell wall | 4.2 | beta-fructofuranosidase 1 identical to GB:S37212 from [Arabidopsis thaliana]; supported by cDNA: gi_15027838_gb_AY045776.1_ |
AT3G24090 | Q9LIP9 | 35.1 | not assigned.no ontology | 3.5 | glutamine:fructose-6-phosphate amidotransferase, putative similar to glutamine:fructose-6-phosphate amidotransferase 2 GB:BAA74729 [Mus musculus] |
AT3G19010 | Q9LJ65 | 21.2 | redox.ascorbate and glutathione | 3.1 | hypothetical protein contains similarity to flavonol synthase (FLS) GB:Q41452 from [Solanum tuberosum], contains Pfam profile: PF00671 Iron/Ascorbate oxidoreductase family;supported by full-length cDNA: Ceres:41506. |