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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT1G66690
Q9C9M2
17.8.1
hormone metabolism.salicylic acid.synthesis-degradation
9.5
unknown protein
AT3G10930
Q84TK4
35.2
not assigned.unknown
2.1
hypothetical protein predicted by genefinder;supported by full-length cDNA: Ceres:12509.
AT1G36640
Q9C8F3
35.2
not assigned.unknown
2.3
unknown protein
AT1G66090
Q9C515
20.1.7
stress.biotic.PR-proteins
4.8
disease resistance protein, putative similar to disease resistance protein RPP1-WsA [Arabidopsis thaliana] GI:3860163; supported by full-length cDNA: Ceres: 93530.
AT3G28210
Q67YE6
27.3.11
RNA.regulation of transcription.C2H2 zinc finger family
2.5
zinc finger protein (PMZ), putative identical to putative zinc finger protein (PMZ) GB:AAD37511 GI:5006473 [Arabidopsis thaliana]
AT3G28340
Q9LHD2
3.1.1.2
minor CHO metabolism.raffinose family.galactinol synthases.putative
2.3
unknown protein
AT3G13610
Q9LHN8
28.99
DNA.unspecified
3.8
unknown protein contains similarity to DNA-binding protein zyxin GB:X99063 GI:1430882 from [Mus musculus]
AT3G25600
Q9LI84
30.3
signalling.calcium
2.2
calmodulin, putative similar to GB:P07463 from [Paramecium tetraurelia] (Cell 62 (1), 165-174 (1990))
AT3G25610
Q9LI83
34.1
transport.p- and v-ATPases
5.3
ATPase II, putative similar to GB:AAD34706 from [Homo sapiens] (Biochem. Biophys. Res. Commun. 257 (2), 333-339 (1999))
AT3G13790
Q43866
2.2.1.3.2
major CHO metabolism.degradation.sucrose.invertases.cell wall
4.2
beta-fructofuranosidase 1 identical to GB:S37212 from [Arabidopsis thaliana]; supported by cDNA: gi_15027838_gb_AY045776.1_
AT3G24090
Q9LIP9
35.1
not assigned.no ontology
3.5
glutamine:fructose-6-phosphate amidotransferase, putative similar to glutamine:fructose-6-phosphate amidotransferase 2 GB:BAA74729 [Mus musculus]
AT3G19010
Q9LJ65
21.2
redox.ascorbate and glutathione
3.1
hypothetical protein contains similarity to flavonol synthase (FLS) GB:Q41452 from [Solanum tuberosum], contains Pfam profile: PF00671 Iron/Ascorbate oxidoreductase family;supported by full-length cDNA: Ceres:41506.
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