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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT1G19180
Q9LMA8
17.7.2
hormone metabolism.jasmonate.signal transduction
3
unknown protein ;supported by full-length cDNA: Ceres:38751.
AT1G58340
Q9SLV0
34.99
transport.misc
3.3
unknown protein contains Pfam profile: PF01554 uncharacterized membrane protein family UPF0013; supported by cDNA: gi_6520160_dbj_AB028198.1_AB028198
AT1G07000
Q9LMJ4
27.3.99
RNA.regulation of transcription.unclassified
3.3
leucine zipper protein, putative similar to leucine zipper protein GI:10177020 from [Arabidopsis thaliana]
AT1G07020
Q8LCS6
35.2
not assigned.unknown
2.1
Expressed protein ; supported by full-length cDNA: Ceres: 250775.
AT1G18210
Q9LE22
30.3
signalling.calcium
2.2
calcium-binding protein, putative similar to calcium-binding protein GI:6901652 from [Olea europaea];supported by full-length cDNA: Ceres:19462.
AT1G51800
Q9C8I6
30.2.99
signalling.receptor kinases.misc
6.3
receptor protein kinase, putative contains Pfam profiles: PF00069: Eukaryotic protein kinase domain, multiple PF00560: Leucine Rich Repeat
AT1G51780
Q9SWX9
17.2.1
hormone metabolism.auxin.synthesis-degradation
3.4
auxin conjugate hydrolase (ILL5) identical to auxin conjugate hydrolase [Arabidopsis thaliana] (ILL5) GI:5725649;contains nonconsensus AT acceptor splice site at exon3
AT1G56340
O04151
30.3
signalling.calcium
2.4
calreticulin (crt1) identical to calreticulin (crt1) GI:2052379 [Arabidopsis thaliana]; supported by cDNA: gi_2052378_gb_U66343.1_ATU66343
AT3G11340
Q9C768
26.2
misc.UDP glucosyl and glucoronyl transferases
5.7
glucosyl transferase, putative similar to zeatin O-xylosyltransferase SP:P56725 [Phaseolus vulgaris (Kidney bean) (French bean)]
AT3G11230
Q9C777
35.1
not assigned.no ontology
2.2
unknown protein ; supported by full-length cDNA: Ceres: 9180.
AT1G30370
Q9C8G6
11.9.2.1
lipid metabolism.lipid degradation.lipases.triacylglycerol lipase
2.3
lipase, putative contains Pfam profile: PF01764: Lipase
AT1G72070
A0A1P8AWR2
20.2.1
stress.abiotic.heat
3.4
unknown protein
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