Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT1G19180 | Q9LMA8 | 17.7.2 | hormone metabolism.jasmonate.signal transduction | 3 | unknown protein ;supported by full-length cDNA: Ceres:38751. |
AT1G58340 | Q9SLV0 | 34.99 | transport.misc | 3.3 | unknown protein contains Pfam profile: PF01554 uncharacterized membrane protein family UPF0013; supported by cDNA: gi_6520160_dbj_AB028198.1_AB028198 |
AT1G07000 | Q9LMJ4 | 27.3.99 | RNA.regulation of transcription.unclassified | 3.3 | leucine zipper protein, putative similar to leucine zipper protein GI:10177020 from [Arabidopsis thaliana] |
AT1G07020 | Q8LCS6 | 35.2 | not assigned.unknown | 2.1 | Expressed protein ; supported by full-length cDNA: Ceres: 250775. |
AT1G18210 | Q9LE22 | 30.3 | signalling.calcium | 2.2 | calcium-binding protein, putative similar to calcium-binding protein GI:6901652 from [Olea europaea];supported by full-length cDNA: Ceres:19462. |
AT1G51800 | Q9C8I6 | 30.2.99 | signalling.receptor kinases.misc | 6.3 | receptor protein kinase, putative contains Pfam profiles: PF00069: Eukaryotic protein kinase domain, multiple PF00560: Leucine Rich Repeat |
AT1G51780 | Q9SWX9 | 17.2.1 | hormone metabolism.auxin.synthesis-degradation | 3.4 | auxin conjugate hydrolase (ILL5) identical to auxin conjugate hydrolase [Arabidopsis thaliana] (ILL5) GI:5725649;contains nonconsensus AT acceptor splice site at exon3 |
AT1G56340 | O04151 | 30.3 | signalling.calcium | 2.4 | calreticulin (crt1) identical to calreticulin (crt1) GI:2052379 [Arabidopsis thaliana]; supported by cDNA: gi_2052378_gb_U66343.1_ATU66343 |
AT3G11340 | Q9C768 | 26.2 | misc.UDP glucosyl and glucoronyl transferases | 5.7 | glucosyl transferase, putative similar to zeatin O-xylosyltransferase SP:P56725 [Phaseolus vulgaris (Kidney bean) (French bean)] |
AT3G11230 | Q9C777 | 35.1 | not assigned.no ontology | 2.2 | unknown protein ; supported by full-length cDNA: Ceres: 9180. |
AT1G30370 | Q9C8G6 | 11.9.2.1 | lipid metabolism.lipid degradation.lipases.triacylglycerol lipase | 2.3 | lipase, putative contains Pfam profile: PF01764: Lipase |
AT1G72070 | A0A1P8AWR2 | 20.2.1 | stress.abiotic.heat | 3.4 | unknown protein |