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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT4G02380
Q93WF6
33.2
development.late embryogenesis abundant
3.5
coded for by A. thaliana cDNA T46835 similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292);supported by full-length cDNA: Ceres:2
AT4G01870
Q9SYI5
35.1
not assigned.no ontology
2.4
predicted protein of unknown function similar to bacterial tolB proteins but unclear if T7B11.13 is involved in viral transport
AT4G01750
Q9ZSJ0
10.4.3.6
cell wall.pectin synthesis.rhamnogalacturonan II.Xylose Transferase with Fucose Acceptor
2.7
hypothetical protein T15B16.8
AT4G01700
Q9ZSI6
20.1
stress.biotic
2
putative chitinase similar to peanut type II chitinase, GenBank accession number X82329, E.C. 3.2.1.14
AT4G01390
Q9M134
35.1
not assigned.no ontology
2.1
hypothetical protein
AT1G25400
Q9C6L0
35.2
not assigned.unknown
2.2
unknown protein similar to unknown protein GI:6714347 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:103226.
AT1G18570
O49782
16.5.1.2.3
secondary metabolism.sulfur-containing.glucosinolates.regulation.indole
7.1
myb factor, putative similar to myb factor GI:1946266 from [Oryza sativa]; supported by cDNA: gi_3941465_gb_AF062887.1_AF062887
AT1G22180
Q9LM14
29.3.4.99
protein.targeting.secretory pathway.unspecified
6.5
hypothetical protein contains Pfam profile: PF00650 CRAL/TRIO domain
AT1G22360
Q9ZWJ3
26.2
misc.UDP glucosyl and glucoronyl transferases
2.8
UDP-glucose glucosyltransferase identical to UDP-glucose glucosyltransferase GI:3928543 from [Arabidopsis thaliana]; supported by cDNA: gi_12083243_gb_AF332418.1_AF332418
AT1G22070
Q39234
27.3.35
RNA.regulation of transcription.bZIP transcription factor family
2.7
transcription factor identical to transcription factor GI:304113 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:33016.
AT1G22280
Q9LME4
29.4
protein.postranslational modification
2.1
protein phosphatase type 2C, putative similar to protein phosphatase type 2C GI:4336436 from [Lotus japonicus];supported by full-length cDNA: Ceres:119977.
AT1G19250
Q9LMA1
26.7
misc.oxidases - copper, flavone etc
5.4
unknown protein similar to dimethylaniline monooxygenase (N-oxide-forming)-like protein GI:9759603 from [Arabidopsis thaliana]
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