Species & Dataset
Experiment
Foliar ozone injury
-
Arabidopsis thaliana
-
Common name: Thale cress, Mouse-ear cress
-
Family: Brassicaceae
-
-
Cultivar : Columbia (ecotype Col-0)
-
Tissue: Rosettes
-
Ozone concentration: 300 ppb
-
Ozone exposure: 6 hours (0800-1400 h)
-
Platform: Microarray analysis
-
Year of study: 2006
-
Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT4G02380 | Q93WF6 | 33.2 | development.late embryogenesis abundant | 3.5 | coded for by A. thaliana cDNA T46835 similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292);supported by full-length cDNA: Ceres:2 |
AT4G01870 | Q9SYI5 | 35.1 | not assigned.no ontology | 2.4 | predicted protein of unknown function similar to bacterial tolB proteins but unclear if T7B11.13 is involved in viral transport |
AT4G01750 | Q9ZSJ0 | 10.4.3.6 | cell wall.pectin synthesis.rhamnogalacturonan II.Xylose Transferase with Fucose Acceptor | 2.7 | hypothetical protein T15B16.8 |
AT4G01700 | Q9ZSI6 | 20.1 | stress.biotic | 2 | putative chitinase similar to peanut type II chitinase, GenBank accession number X82329, E.C. 3.2.1.14 |
AT4G01390 | Q9M134 | 35.1 | not assigned.no ontology | 2.1 | hypothetical protein |
AT1G25400 | Q9C6L0 | 35.2 | not assigned.unknown | 2.2 | unknown protein similar to unknown protein GI:6714347 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:103226. |
AT1G18570 | O49782 | 16.5.1.2.3 | secondary metabolism.sulfur-containing.glucosinolates.regulation.indole | 7.1 | myb factor, putative similar to myb factor GI:1946266 from [Oryza sativa]; supported by cDNA: gi_3941465_gb_AF062887.1_AF062887 |
AT1G22180 | Q9LM14 | 29.3.4.99 | protein.targeting.secretory pathway.unspecified | 6.5 | hypothetical protein contains Pfam profile: PF00650 CRAL/TRIO domain |
AT1G22360 | Q9ZWJ3 | 26.2 | misc.UDP glucosyl and glucoronyl transferases | 2.8 | UDP-glucose glucosyltransferase identical to UDP-glucose glucosyltransferase GI:3928543 from [Arabidopsis thaliana]; supported by cDNA: gi_12083243_gb_AF332418.1_AF332418 |
AT1G22070 | Q39234 | 27.3.35 | RNA.regulation of transcription.bZIP transcription factor family | 2.7 | transcription factor identical to transcription factor GI:304113 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:33016. |
AT1G22280 | Q9LME4 | 29.4 | protein.postranslational modification | 2.1 | protein phosphatase type 2C, putative similar to protein phosphatase type 2C GI:4336436 from [Lotus japonicus];supported by full-length cDNA: Ceres:119977. |
AT1G19250 | Q9LMA1 | 26.7 | misc.oxidases - copper, flavone etc | 5.4 | unknown protein similar to dimethylaniline monooxygenase (N-oxide-forming)-like protein GI:9759603 from [Arabidopsis thaliana] |