Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT1G18570 | O49782 | 16.5.1.2.3 | secondary metabolism.sulfur-containing.glucosinolates.regulation.indole | 7.1 | myb factor, putative similar to myb factor GI:1946266 from [Oryza sativa]; supported by cDNA: gi_3941465_gb_AF062887.1_AF062887 |
AT1G06180 | Q9LNC9 | 27.3.25 | RNA.regulation of transcription.MYB domain transcription factor family | 2.3 | MYB-related protein identical to GB:CAA90748 GI:1263093 from [Arabidopsis thaliana] |
AT3G23250 | Q9LTC4 | 27.3.25 | RNA.regulation of transcription.MYB domain transcription factor family | 5.9 | myb-related transcription factor, putative similar to myb-related transcription factor GB:CAA66952 from [Lycopersicon esculentum] |
AT1G66230 | Q9C7U7 | 27.3.25 | RNA.regulation of transcription.MYB domain transcription factor family | 1.7 | myb-related transcription factor, putative similar to GI:1430846 from [Lycopersicon esculentum] |
AT5G15310 | Q9LXF1 | 27.3.25 | RNA.regulation of transcription.MYB domain transcription factor family | -2.5 | myb-related protein - like myb-related protein 1, garden petunia, PIR:S26605 |
AT5G67300 | Q9FDW1 | 27.3.25 | RNA.regulation of transcription.MYB domain transcription factor family | -1.7 | myb-related protein, 33.3K (pir |S71284) ;supported by full-length cDNA: Ceres:33763. |
AT3G46130 | Q9LX82 | 27.3.25 | RNA.regulation of transcription.MYB domain transcription factor family | -2.5 | Myb DNA binding protein -like MYB59, Arabidopsis thaliana, EMBL:AF062894; supported by cDNA: gi_9864078_gb_AF272733.1_AF272733 |
AT5G59780 | Q4JL84 | 27.3.25 | RNA.regulation of transcription.MYB domain transcription factor family | n.c. | MYB27 protein - like MYB27 protein, Arabidopsis thaliana, PIR:T46166; supported by cDNA: gi_3941479_gb_AF062894.1_AF062894 |
AT1G74430 | A0A1P8APC6 | 27.3.25 | RNA.regulation of transcription.MYB domain transcription factor family | n.c. | putative MYB family transcription factor contains Pfam profile: PF00249 Myb-like DNA-binding domain; similar to N-term of myb GB:CAA72218 [Oryza sativa]; supported by cDNA: gi_15375287_gb_AF217205.2_AF217205 |
AT4G20820 | Q9SVG5 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | n.c | reticuline oxidase - like protein reticuline oxidase (EC 1.5.3.9) precursor, Eschscholzia californica, PIR2:A41533 |
AT4G20840 | Q9SVG3 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | n.c | reticuline oxidase - like protein reticuline oxidase precursor, Eschscholzia californica, PIR:A41533 |
AT4G20830 | Q9SVG4 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | 5.9 | reticuline oxidase -like protein reticuline oxidase, Eschscholzia californica, PIR:A41533; supported by cDNA: gi_15983492_gb_AF424621.1_AF424621 |