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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT1G18570
O49782
16.5.1.2.3
secondary metabolism.sulfur-containing.glucosinolates.regulation.indole
7.1
myb factor, putative similar to myb factor GI:1946266 from [Oryza sativa]; supported by cDNA: gi_3941465_gb_AF062887.1_AF062887
AT1G06180
Q9LNC9
27.3.25
RNA.regulation of transcription.MYB domain transcription factor family
2.3
MYB-related protein identical to GB:CAA90748 GI:1263093 from [Arabidopsis thaliana]
AT3G23250
Q9LTC4
27.3.25
RNA.regulation of transcription.MYB domain transcription factor family
5.9
myb-related transcription factor, putative similar to myb-related transcription factor GB:CAA66952 from [Lycopersicon esculentum]
AT1G66230
Q9C7U7
27.3.25
RNA.regulation of transcription.MYB domain transcription factor family
1.7
myb-related transcription factor, putative similar to GI:1430846 from [Lycopersicon esculentum]
AT5G15310
Q9LXF1
27.3.25
RNA.regulation of transcription.MYB domain transcription factor family
-2.5
myb-related protein - like myb-related protein 1, garden petunia, PIR:S26605
AT5G67300
Q9FDW1
27.3.25
RNA.regulation of transcription.MYB domain transcription factor family
-1.7
myb-related protein, 33.3K (pir |S71284) ;supported by full-length cDNA: Ceres:33763.
AT3G46130
Q9LX82
27.3.25
RNA.regulation of transcription.MYB domain transcription factor family
-2.5
Myb DNA binding protein -like MYB59, Arabidopsis thaliana, EMBL:AF062894; supported by cDNA: gi_9864078_gb_AF272733.1_AF272733
AT5G59780
Q4JL84
27.3.25
RNA.regulation of transcription.MYB domain transcription factor family
n.c.
MYB27 protein - like MYB27 protein, Arabidopsis thaliana, PIR:T46166; supported by cDNA: gi_3941479_gb_AF062894.1_AF062894
AT1G74430
A0A1P8APC6
27.3.25
RNA.regulation of transcription.MYB domain transcription factor family
n.c.
putative MYB family transcription factor contains Pfam profile: PF00249 Myb-like DNA-binding domain; similar to N-term of myb GB:CAA72218 [Oryza sativa]; supported by cDNA: gi_15375287_gb_AF217205.2_AF217205
AT4G20820
Q9SVG5
26.8
misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases
n.c
reticuline oxidase - like protein reticuline oxidase (EC 1.5.3.9) precursor, Eschscholzia californica, PIR2:A41533
AT4G20840
Q9SVG3
26.8
misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases
n.c
reticuline oxidase - like protein reticuline oxidase precursor, Eschscholzia californica, PIR:A41533
AT4G20830
Q9SVG4
26.8
misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases
5.9
reticuline oxidase -like protein reticuline oxidase, Eschscholzia californica, PIR:A41533; supported by cDNA: gi_15983492_gb_AF424621.1_AF424621
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