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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT4G09570
Q38869
30.3
signalling.calcium
2.1
calmodulin-domain protein kinase CDPK isoform 4 (CPK4)
AT4G08770
Q9LDN9
26.12
misc.peroxidases
6.2
peroxidase C2 precursor like protein peroxidase (EC 1.11.1.7) C2 precursor - Armoracia rusticana,PID:d1014846
AT4G08780
Q9LDA4
26.12
misc.peroxidases
2
peroxidase C2 precursor like protein peroxidase (EC 1.11.1.7) C2 precursor - Armoracia rusticana,PID:d1014846
AT4G05390
Q9M0V6
7.3
OPP.electron transfer
2.4
ferredoxin--NADP+ reductase - like protein ferredoxin--NADP+ reductase, Pisum sativum, PIR:T06773;supported by full-length cDNA: Ceres:33486.
AT4G05020
Q94BV7
9.2.1.2
mitochondrial electron transport / ATP synthesis.NADH-DH.type II.external
2.3
coded for by A. thaliana cDNA W43435 ; supported by cDNA: gi_14532463_gb_AY039856.1_
AT4G05110
Q944N8
34.14
transport.unspecified cations
2
putative protein equilibrative nucleoside transporter 1, Homo sapiens, gb:NP_004946
AT4G04910
Q9M0Y8
29.5.9
protein.degradation.AAA type
2.1
putative component of vesicle-mediated transport similar to N. tabacum N-ethylmaleimide sensitive fusion protein, GenBank accession number D86506
AT4G04220
F4JGB6
20.1.7
stress.biotic.PR-proteins
2.4
putative disease resistance protein similar to receptor protein kinases
AT4G04490
Q9XEC6
30.2.17
signalling.receptor kinases.DUF 26
2.3
putative receptor-like protein kinase
AT4G04510
Q9XEC8
30.2.17
signalling.receptor kinases.DUF 26
2.4
putative receptor-like protein kinase
AT4G03450
Q9ZT73
31.1
cell.organisation
2.3
hypothetical protein similar to hypothetical protein encoded by FCA1, GenBank accession number Z97336
AT4G02940
Q9ZT92
35.1
not assigned.no ontology
2.4
hypothetical protein similar to A. thaliana hypothetical protein T13L16.2, GenBank accession number 2708738
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