Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT4G09570 | Q38869 | 30.3 | signalling.calcium | 2.1 | calmodulin-domain protein kinase CDPK isoform 4 (CPK4) |
AT4G08770 | Q9LDN9 | 26.12 | misc.peroxidases | 6.2 | peroxidase C2 precursor like protein peroxidase (EC 1.11.1.7) C2 precursor - Armoracia rusticana,PID:d1014846 |
AT4G08780 | Q9LDA4 | 26.12 | misc.peroxidases | 2 | peroxidase C2 precursor like protein peroxidase (EC 1.11.1.7) C2 precursor - Armoracia rusticana,PID:d1014846 |
AT4G05390 | Q9M0V6 | 7.3 | OPP.electron transfer | 2.4 | ferredoxin--NADP+ reductase - like protein ferredoxin--NADP+ reductase, Pisum sativum, PIR:T06773;supported by full-length cDNA: Ceres:33486. |
AT4G05020 | Q94BV7 | 9.2.1.2 | mitochondrial electron transport / ATP synthesis.NADH-DH.type II.external | 2.3 | coded for by A. thaliana cDNA W43435 ; supported by cDNA: gi_14532463_gb_AY039856.1_ |
AT4G05110 | Q944N8 | 34.14 | transport.unspecified cations | 2 | putative protein equilibrative nucleoside transporter 1, Homo sapiens, gb:NP_004946 |
AT4G04910 | Q9M0Y8 | 29.5.9 | protein.degradation.AAA type | 2.1 | putative component of vesicle-mediated transport similar to N. tabacum N-ethylmaleimide sensitive fusion protein, GenBank accession number D86506 |
AT4G04220 | F4JGB6 | 20.1.7 | stress.biotic.PR-proteins | 2.4 | putative disease resistance protein similar to receptor protein kinases |
AT4G04490 | Q9XEC6 | 30.2.17 | signalling.receptor kinases.DUF 26 | 2.3 | putative receptor-like protein kinase |
AT4G04510 | Q9XEC8 | 30.2.17 | signalling.receptor kinases.DUF 26 | 2.4 | putative receptor-like protein kinase |
AT4G03450 | Q9ZT73 | 31.1 | cell.organisation | 2.3 | hypothetical protein similar to hypothetical protein encoded by FCA1, GenBank accession number Z97336 |
AT4G02940 | Q9ZT92 | 35.1 | not assigned.no ontology | 2.4 | hypothetical protein similar to A. thaliana hypothetical protein T13L16.2, GenBank accession number 2708738 |