Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT3G13950 | B9DG91 | 35.2 | not assigned.unknown | 3.3 | hypothetical protein predicted by genemark.hmm |
AT3G14050 | Q9LVJ3 | 20.1.5 | stress.biotic.regulation of transcription | 5 | putative GTP pyrophosphokinase similar to GTP PYROPHOSPHOKINASE GB:O87331 from [Corynebacterium glutamicum]; supported by cDNA: gi_7141305_gb_AF225703.1_AF225703 |
AT3G26840 | Q9LW26 | 26.5 | misc.acyl transferases | 2.1 | unknown protein ; supported by cDNA: gi_13430465_gb_AF360145.1_AF360145 |
AT3G15760 | Q9LW03 | 35.2 | not assigned.unknown | 2.3 | unknown protein ;supported by full-length cDNA: Ceres:8259. |
AT3G26830 | Q9LW27 | 26.1 | misc.cytochrome P450 | 15.5 | putative cytochrome P450 similar to cytochrome P450 71B2 GB:O65788 [Arabidopsis thaliana] |
AT3G26910 | B9DFW5 | 27.3.67 | RNA.regulation of transcription.putative transcription regulator | 2.9 | unknown protein |
AT3G14310 | O49006 | 10.8.1 | cell wall.pectin*esterases.PME | 2.6 | putative pectin methylesterase similar to pectin methylesterase GB:Q42534 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:13261. |
AT3G17690 | Q9LDR2 | 34.22 | transport.cyclic nucleotide or calcium regulated channels | 2.2 | hypothetical protein contains similarity to ion channel protein from [Arabidopsis Thaliana] |
AT3G15500 | Q9LDY8 | 27.3.27 | RNA.regulation of transcription.NAC domain transcription factor family | 2.4 | putative jasmonic acid regulatory protein similar to jasmonic acid 2 GB:AAF04915 from [Lycopersicon esculentum];supported by full-length cDNA: Ceres:109984. |
AT3G17240 | Q9M5K2 | 8.1.1.3 | TCA / org transformation.TCA.pyruvate DH.E3 | 2 | lipoamide dehydrogenase precursor identical to GB:AAF34796 from [Arabidopsis thaliana] |
AT3G22400 | Q9LUW0 | 17.7.1.2 | hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase | 3.2 | putative lipoxygenase similar to lipoxygenase GB:AAB67865 from [Solanum tuberosum] |
AT4G11280 | Q9SAR0 | 17.5.1.1 | hormone metabolism.ethylene.synthesis-degradation.1-aminocyclopropane-1-carboxylate synthase | 3.9 | ACC synthase (AtACS-6) ; supported by cDNA: gi_16226285_gb_AF428292.1_AF428292 |