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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT3G13950
B9DG91
35.2
not assigned.unknown
3.3
hypothetical protein predicted by genemark.hmm
AT3G14050
Q9LVJ3
20.1.5
stress.biotic.regulation of transcription
5
putative GTP pyrophosphokinase similar to GTP PYROPHOSPHOKINASE GB:O87331 from [Corynebacterium glutamicum]; supported by cDNA: gi_7141305_gb_AF225703.1_AF225703
AT3G26840
Q9LW26
26.5
misc.acyl transferases
2.1
unknown protein ; supported by cDNA: gi_13430465_gb_AF360145.1_AF360145
AT3G15760
Q9LW03
35.2
not assigned.unknown
2.3
unknown protein ;supported by full-length cDNA: Ceres:8259.
AT3G26830
Q9LW27
26.1
misc.cytochrome P450
15.5
putative cytochrome P450 similar to cytochrome P450 71B2 GB:O65788 [Arabidopsis thaliana]
AT3G26910
B9DFW5
27.3.67
RNA.regulation of transcription.putative transcription regulator
2.9
unknown protein
AT3G14310
O49006
10.8.1
cell wall.pectin*esterases.PME
2.6
putative pectin methylesterase similar to pectin methylesterase GB:Q42534 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:13261.
AT3G17690
Q9LDR2
34.22
transport.cyclic nucleotide or calcium regulated channels
2.2
hypothetical protein contains similarity to ion channel protein from [Arabidopsis Thaliana]
AT3G15500
Q9LDY8
27.3.27
RNA.regulation of transcription.NAC domain transcription factor family
2.4
putative jasmonic acid regulatory protein similar to jasmonic acid 2 GB:AAF04915 from [Lycopersicon esculentum];supported by full-length cDNA: Ceres:109984.
AT3G17240
Q9M5K2
8.1.1.3
TCA / org transformation.TCA.pyruvate DH.E3
2
lipoamide dehydrogenase precursor identical to GB:AAF34796 from [Arabidopsis thaliana]
AT3G22400
Q9LUW0
17.7.1.2
hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase
3.2
putative lipoxygenase similar to lipoxygenase GB:AAB67865 from [Solanum tuberosum]
AT4G11280
Q9SAR0
17.5.1.1
hormone metabolism.ethylene.synthesis-degradation.1-aminocyclopropane-1-carboxylate synthase
3.9
ACC synthase (AtACS-6) ; supported by cDNA: gi_16226285_gb_AF428292.1_AF428292
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