Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT3G23250 | Q9LTC4 | 27.3.25 | RNA.regulation of transcription.MYB domain transcription factor family | 5.9 | myb-related transcription factor, putative similar to myb-related transcription factor GB:CAA66952 from [Lycopersicon esculentum] |
AT3G21780 | Q9LSY6 | 17.1.1 | hormone metabolism.abscisic acid.synthesis-degradation | 2.2 | putative UDP-glucose glucosyltransferase similar to GB:Q40284 from [Manihot esculenta] |
AT3G21700 | Q8LBR4 | 35.2 | not assigned.unknown | 3.9 | putative SGP1 monomeric G-protein similar to GB:CAB54517 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:30989. |
AT3G20860 | Q9LT35 | 29.4 | protein.postranslational modification | 2 | putative serine/threonine protein kinase similar to GB:NP_035979 from [Mus musculus] |
AT3G28940 | Q9MBH2 | 20.1 | stress.biotic | 2.1 | AIG2-like protein similar to AIG2 protein GB:P54121 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:5137. |
AT3G28930 | P54121 | 20.1.3 | stress.biotic.signalling | 4.1 | AIG2-like protein similar to AIG2 protein GB:P54121 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:28511. |
AT3G19515 | F4JB86 | 35.2 | not assigned.unknown | 2.3 | hypothetical protein predicted by genemark; supported by cDNA: gi_15450957_gb_AY054559.1_ |
AT3G26020 | Q9LU89 | 29.4 | protein.postranslational modification | 2.1 | putative B regulatory subunit of protein phosphatase 2A similar to GB:AAB58902 from [Arabidopsis thaliana]; supported by cDNA: gi_14194122_gb_AF367267.1_AF367267 |
AT3G23660 | Q9LUG1 | 29.3.4.2 | protein.targeting.secretory pathway.golgi | 2.1 | transport protein, putative similar to transport protein GB:CAB10195 from [Arabidopsis thaliana] |
AT3G23550 | Q9LUH3 | 34.99 | transport.misc | 8.8 | unknown protein |
AT3G23530 | Q8VZH1 | 11.3.7 | lipid metabolism.Phospholipid synthesis.cyclopropane-fatty-acyl-phospholipid synthase | 5 | hypothetical protein contains Pfam profile: PF01494 FAD binding domain |
AT3G18080 | Q9LV33 | 26.3 | misc.gluco-, galacto- and mannosidases | 2.4 | beta-glucosidase, putative similar to beta-glucosidase BGQ60 precursor GB:A57512 [Hordeum vulgare];supported by full-length cDNA: Ceres:11984. |