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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT3G23250
Q9LTC4
27.3.25
RNA.regulation of transcription.MYB domain transcription factor family
5.9
myb-related transcription factor, putative similar to myb-related transcription factor GB:CAA66952 from [Lycopersicon esculentum]
AT3G21780
Q9LSY6
17.1.1
hormone metabolism.abscisic acid.synthesis-degradation
2.2
putative UDP-glucose glucosyltransferase similar to GB:Q40284 from [Manihot esculenta]
AT3G21700
Q8LBR4
35.2
not assigned.unknown
3.9
putative SGP1 monomeric G-protein similar to GB:CAB54517 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:30989.
AT3G20860
Q9LT35
29.4
protein.postranslational modification
2
putative serine/threonine protein kinase similar to GB:NP_035979 from [Mus musculus]
AT3G28940
Q9MBH2
20.1
stress.biotic
2.1
AIG2-like protein similar to AIG2 protein GB:P54121 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:5137.
AT3G28930
P54121
20.1.3
stress.biotic.signalling
4.1
AIG2-like protein similar to AIG2 protein GB:P54121 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:28511.
AT3G19515
F4JB86
35.2
not assigned.unknown
2.3
hypothetical protein predicted by genemark; supported by cDNA: gi_15450957_gb_AY054559.1_
AT3G26020
Q9LU89
29.4
protein.postranslational modification
2.1
putative B regulatory subunit of protein phosphatase 2A similar to GB:AAB58902 from [Arabidopsis thaliana]; supported by cDNA: gi_14194122_gb_AF367267.1_AF367267
AT3G23660
Q9LUG1
29.3.4.2
protein.targeting.secretory pathway.golgi
2.1
transport protein, putative similar to transport protein GB:CAB10195 from [Arabidopsis thaliana]
AT3G23550
Q9LUH3
34.99
transport.misc
8.8
unknown protein
AT3G23530
Q8VZH1
11.3.7
lipid metabolism.Phospholipid synthesis.cyclopropane-fatty-acyl-phospholipid synthase
5
hypothetical protein contains Pfam profile: PF01494 FAD binding domain
AT3G18080
Q9LV33
26.3
misc.gluco-, galacto- and mannosidases
2.4
beta-glucosidase, putative similar to beta-glucosidase BGQ60 precursor GB:A57512 [Hordeum vulgare];supported by full-length cDNA: Ceres:11984.
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