Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT3G21520 | Q9LVF4 | 35.2 | not assigned.unknown | 8.1 | hypothetical protein |
AT3G20410 | Q38868 | 30.3 | signalling.calcium | 3.3 | calmodulin-domain protein kinase CDPK isoform 9 identical to GB:AAB03242 from [Arabidopsis thaliana]; supported by cDNA: gi_1399264_gb_U31751.1_ATU31751 |
AT3G26210 | Q9LTM0 | 26.1 | misc.cytochrome P450 | 2.4 | cytochrome P450, putative contains Pfam profile: PF00067 cytochrome P450 |
AT3G26200 | Q9LTM1 | 26.1 | misc.cytochrome P450 | 2.3 | cytochrome P450, putative contains Pfam profile: PF00067 cytochrome P450; supported by cDNA: gi_13430717_gb_AF360271.1_AF360271 |
AT3G25780 | Q9LS01 | 17.7.1.4 | hormone metabolism.jasmonate.synthesis-degradation.allene oxidase cyclase | 4.7 | unknown protein ;supported by full-length cDNA: Ceres:3457. |
AT3G12830 | Q9LTV3 | 17.2.3 | hormone metabolism.auxin.induced-regulated-responsive-activated | 2.1 | unknown protein contains similarity to auxin-induced protein GB:P33082 from [Glycine max] |
AT3G26980 | Q9LSD8 | 29.5.11.1 | protein.degradation.ubiquitin.ubiquitin | 2 | geranylgeranylated protein, putative similar to ATGP4 GB:AAD00115 from [Arabidopsis thaliana] |
AT3G26980 | Q9LSD8 | 29.5.11.1 | protein.degradation.ubiquitin.ubiquitin | 2.8 | geranylgeranylated protein, putative similar to ATGP4 GB:AAD00115 from [Arabidopsis thaliana] |
AT3G18830 | Q8VZ80 | 34.2 | transport.sugars | 2.2 | sugar transport, putative similar to D-XYLOSE-PROTON SYMPORTER GB:O52733 from [Lactobacillus brevis] |
AT3G26670 | Q8RWF4 | 35.2 | not assigned.unknown | 3.4 | unknown protein |
AT3G12910 | Q9LSI4 | 27.3.27 | RNA.regulation of transcription.NAC domain transcription factor family | 4.6 | unknown protein |
AT3G25070 | Q8GYN5 | 20.1 | stress.biotic | 2 | unknown protein |