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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT3G21520
Q9LVF4
35.2
not assigned.unknown
8.1
hypothetical protein
AT3G20410
Q38868
30.3
signalling.calcium
3.3
calmodulin-domain protein kinase CDPK isoform 9 identical to GB:AAB03242 from [Arabidopsis thaliana]; supported by cDNA: gi_1399264_gb_U31751.1_ATU31751
AT3G26210
Q9LTM0
26.1
misc.cytochrome P450
2.4
cytochrome P450, putative contains Pfam profile: PF00067 cytochrome P450
AT3G26200
Q9LTM1
26.1
misc.cytochrome P450
2.3
cytochrome P450, putative contains Pfam profile: PF00067 cytochrome P450; supported by cDNA: gi_13430717_gb_AF360271.1_AF360271
AT3G25780
Q9LS01
17.7.1.4
hormone metabolism.jasmonate.synthesis-degradation.allene oxidase cyclase
4.7
unknown protein ;supported by full-length cDNA: Ceres:3457.
AT3G12830
Q9LTV3
17.2.3
hormone metabolism.auxin.induced-regulated-responsive-activated
2.1
unknown protein contains similarity to auxin-induced protein GB:P33082 from [Glycine max]
AT3G26980
Q9LSD8
29.5.11.1
protein.degradation.ubiquitin.ubiquitin
2
geranylgeranylated protein, putative similar to ATGP4 GB:AAD00115 from [Arabidopsis thaliana]
AT3G26980
Q9LSD8
29.5.11.1
protein.degradation.ubiquitin.ubiquitin
2.8
geranylgeranylated protein, putative similar to ATGP4 GB:AAD00115 from [Arabidopsis thaliana]
AT3G18830
Q8VZ80
34.2
transport.sugars
2.2
sugar transport, putative similar to D-XYLOSE-PROTON SYMPORTER GB:O52733 from [Lactobacillus brevis]
AT3G26670
Q8RWF4
35.2
not assigned.unknown
3.4
unknown protein
AT3G12910
Q9LSI4
27.3.27
RNA.regulation of transcription.NAC domain transcription factor family
4.6
unknown protein
AT3G25070
Q8GYN5
20.1
stress.biotic
2
unknown protein
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