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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT3G14200
Q9LJG5
20.2.1
stress.abiotic.heat
2.3
hypothetical protein predicted by genemark.hmm
AT3G19260
Q9LJK3
11.8.1
lipid metabolism.'exotics' (steroids, squalene etc).sphingolipids
4.5
longevity factor-like protein similar to LAG1Ce-1 GB:AAD16893 from [Caenorhabditis elegans] (Genome Res.(1998) 8 (12), 1259-1272);supported by full-length cDNA: Ceres:123372.
AT3G18250
Q6E248
35.2
not assigned.unknown
4
hypothetical protein predicted by genscan+
AT3G20510
Q9LJU6
35.2
not assigned.unknown
2.4
unknown protein
AT3G28890
Q9LJW7
20.1
stress.biotic
2
disease resistance protein, putative similar to disease resistance protein (Cf-5) GB:AAC78591 [Lycopersicon esculentum]
AT3G23510
#N/A
11.3.7
lipid metabolism.Phospholipid synthesis.cyclopropane-fatty-acyl-phospholipid synthase
2.2
cyclopropane-fatty-acyl-phospholipid synthase, putative similar to cyclopropane-fatty-acyl-phospholipid synthase GB:P30010 [Escherichia coli]
AT3G16530
Q9LK72
26.16
misc.myrosinases-lectin-jacalin
5.7
putative lectin similar to lectin SP:P02874 [Onobrychis viciifolia]; contains Pfam profile: PF00139 legume lectins beta domain; supported by cDNA: gi_15809853_gb_AY054194.1_
AT3G14990
Q9FPF0
18.2
Co-factor and vitamine metabolism.thiamine
2.7
4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative similar to ThiJ GB:AAA82704 [Escherichia coli]; likely encodes two ThiJ subunits within a single polypeptide; supported by cDNA: gi_14517477_gb_AY039574.1_
AT3G22060
Q9LRJ9
30.2.99
signalling.receptor kinases.misc
4
hypothetical protein contains Pfam profile: PF01657 Domain of unknown function; supported by cDNA: gi_14334417_gb_AY034900.1_
AT3G17420
Q9LRP3
29.4.1.55
protein.postranslational modification.kinase.receptor like cytoplasmatic kinase V
2.5
serine/threonine protein kinase, putative contains Pfam profile: PF00069 Eukaryotic protein kinase domain
AT2G26020
O80994
20.1.7.12
stress.biotic.PR-proteins.plant defensins
9.4
putative antifungal protein
AT3G02800
Q681Z2
35.2
not assigned.unknown
4.7
unknown protein
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