Species & Dataset
Experiment
Foliar ozone injury
-
Arabidopsis thaliana
-
Common name: Thale cress, Mouse-ear cress
-
Family: Brassicaceae
-
-
Cultivar : Columbia (ecotype Col-0)
-
Tissue: Rosettes
-
Ozone concentration: 300 ppb
-
Ozone exposure: 6 hours (0800-1400 h)
-
Platform: Microarray analysis
-
Year of study: 2006
-
Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT3G14200 | Q9LJG5 | 20.2.1 | stress.abiotic.heat | 2.3 | hypothetical protein predicted by genemark.hmm |
AT3G19260 | Q9LJK3 | 11.8.1 | lipid metabolism.'exotics' (steroids, squalene etc).sphingolipids | 4.5 | longevity factor-like protein similar to LAG1Ce-1 GB:AAD16893 from [Caenorhabditis elegans] (Genome Res.(1998) 8 (12), 1259-1272);supported by full-length cDNA: Ceres:123372. |
AT3G18250 | Q6E248 | 35.2 | not assigned.unknown | 4 | hypothetical protein predicted by genscan+ |
AT3G20510 | Q9LJU6 | 35.2 | not assigned.unknown | 2.4 | unknown protein |
AT3G28890 | Q9LJW7 | 20.1 | stress.biotic | 2 | disease resistance protein, putative similar to disease resistance protein (Cf-5) GB:AAC78591 [Lycopersicon esculentum] |
AT3G23510 | #N/A | 11.3.7 | lipid metabolism.Phospholipid synthesis.cyclopropane-fatty-acyl-phospholipid synthase | 2.2 | cyclopropane-fatty-acyl-phospholipid synthase, putative similar to cyclopropane-fatty-acyl-phospholipid synthase GB:P30010 [Escherichia coli] |
AT3G16530 | Q9LK72 | 26.16 | misc.myrosinases-lectin-jacalin | 5.7 | putative lectin similar to lectin SP:P02874 [Onobrychis viciifolia]; contains Pfam profile: PF00139 legume lectins beta domain; supported by cDNA: gi_15809853_gb_AY054194.1_ |
AT3G14990 | Q9FPF0 | 18.2 | Co-factor and vitamine metabolism.thiamine | 2.7 | 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative similar to ThiJ GB:AAA82704 [Escherichia coli]; likely encodes two ThiJ subunits within a single polypeptide; supported by cDNA: gi_14517477_gb_AY039574.1_ |
AT3G22060 | Q9LRJ9 | 30.2.99 | signalling.receptor kinases.misc | 4 | hypothetical protein contains Pfam profile: PF01657 Domain of unknown function; supported by cDNA: gi_14334417_gb_AY034900.1_ |
AT3G17420 | Q9LRP3 | 29.4.1.55 | protein.postranslational modification.kinase.receptor like cytoplasmatic kinase V | 2.5 | serine/threonine protein kinase, putative contains Pfam profile: PF00069 Eukaryotic protein kinase domain |
AT2G26020 | O80994 | 20.1.7.12 | stress.biotic.PR-proteins.plant defensins | 9.4 | putative antifungal protein |
AT3G02800 | Q681Z2 | 35.2 | not assigned.unknown | 4.7 | unknown protein |