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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT1G77500
Q9CAQ5
35.2
not assigned.unknown
2.4
unknown protein similar to GB:AAD41429
AT1G71100
Q9C998
7.2.4
OPP.non-reductive PP.ribose 5-phosphate isomerase
2.2
putative ribose 5-phosphate isomerase similar to ribose 5-phosphate isomerase GB:6677767 from [Mus musculus];supported by full-length cDNA: Ceres:3116.
AT1G77510
Q9SRG3
21.1.1
redox.thioredoxin.PDIL
2.8
putative thioredoxin similar to protein disulfide isomerase precursor GB:P29828 [Medicago sativa]; Pfam HMM hit: Thioredoxins
AT1G29690
Q9C7N2
31.5.1
cell.cell death.plants
2.5
unknown protein ; supported by cDNA: gi_15809819_gb_AY054177.1_
AT1G52200
Q9M815
35.1
not assigned.no ontology
6.2
unknown protein ; supported by full-length cDNA: Ceres: 16614.
AT1G72280
Q9C7S7
29.3.4.1
protein.targeting.secretory pathway.ER
3.1
disulfide bond formation protein, putative similar to GI:6642925 from [Mus musculus]
AT1G76690
Q8GYB8
17.7.1.5
hormone metabolism.jasmonate.synthesis-degradation.12-Oxo-PDA-reductase
2.7
12-oxophytodienoate reductase (OPR2) identical to 12-oxophytodienoate reductase OPR2 GB:AAC78441 [Arabidopsis thaliana]
AT1G72540
Q9CAH1
29.4.1.57
protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII
2
putative protein kinase similar to protein kinase APK1A GB:Q06548 [Arabidopsis thaliana]
AT1G71330
Q9FVV9
34.16
transport.ABC transporters and multidrug resistance systems
2.2
putative ABC transporter contains Pfam profile: PF00005 ABC transporter
AT3G18920
#N/A
#N/A
#N/A
2.3
unknown protein
AT3G21070
Q56YN3
18
Co-factor and vitamine metabolism
2.4
unknown protein
AT3G28580
Q9LJJ7
29.5.9
protein.degradation.AAA type
4.4
hypothetical protein predicted by genemark.hmm
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