Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT1G77500 | Q9CAQ5 | 35.2 | not assigned.unknown | 2.4 | unknown protein similar to GB:AAD41429 |
AT1G71100 | Q9C998 | 7.2.4 | OPP.non-reductive PP.ribose 5-phosphate isomerase | 2.2 | putative ribose 5-phosphate isomerase similar to ribose 5-phosphate isomerase GB:6677767 from [Mus musculus];supported by full-length cDNA: Ceres:3116. |
AT1G77510 | Q9SRG3 | 21.1.1 | redox.thioredoxin.PDIL | 2.8 | putative thioredoxin similar to protein disulfide isomerase precursor GB:P29828 [Medicago sativa]; Pfam HMM hit: Thioredoxins |
AT1G29690 | Q9C7N2 | 31.5.1 | cell.cell death.plants | 2.5 | unknown protein ; supported by cDNA: gi_15809819_gb_AY054177.1_ |
AT1G52200 | Q9M815 | 35.1 | not assigned.no ontology | 6.2 | unknown protein ; supported by full-length cDNA: Ceres: 16614. |
AT1G72280 | Q9C7S7 | 29.3.4.1 | protein.targeting.secretory pathway.ER | 3.1 | disulfide bond formation protein, putative similar to GI:6642925 from [Mus musculus] |
AT1G76690 | Q8GYB8 | 17.7.1.5 | hormone metabolism.jasmonate.synthesis-degradation.12-Oxo-PDA-reductase | 2.7 | 12-oxophytodienoate reductase (OPR2) identical to 12-oxophytodienoate reductase OPR2 GB:AAC78441 [Arabidopsis thaliana] |
AT1G72540 | Q9CAH1 | 29.4.1.57 | protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII | 2 | putative protein kinase similar to protein kinase APK1A GB:Q06548 [Arabidopsis thaliana] |
AT1G71330 | Q9FVV9 | 34.16 | transport.ABC transporters and multidrug resistance systems | 2.2 | putative ABC transporter contains Pfam profile: PF00005 ABC transporter |
AT3G18920 | #N/A | #N/A | #N/A | 2.3 | unknown protein |
AT3G21070 | Q56YN3 | 18 | Co-factor and vitamine metabolism | 2.4 | unknown protein |
AT3G28580 | Q9LJJ7 | 29.5.9 | protein.degradation.AAA type | 4.4 | hypothetical protein predicted by genemark.hmm |