Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT1G01560 | Q9LMM5 | 30.6 | signalling.MAP kinases | 3 | MAP kinase, putative similar to MAP kinase 5 GI:4239889 from [Zea mays] |
AT1G01480 | Q06402 | 17.5.1.1 | hormone metabolism.ethylene.synthesis-degradation.1-aminocyclopropane-1-carboxylate synthase | 2.2 | 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) almost identical to 1-aminocyclopropane-1-carboxylate synthase GI:166578 from [Arabidopsis thaliana]; supported by cDNA: gi_166579_gb_M95595.1_ATHACSC |
AT1G02360 | Q9FZ25 | 20.1 | stress.biotic | 3.7 | chitinase, putative similar to chitinase GI:1237025 from [Arachis hypogaea] |
AT1G02400 | Q9FZ21 | 17.6.1.13 | hormone metabolism.gibberelin.synthesis-degradation.GA2 oxidase | 2 | dioxygenase, putative similar to dioxygenase GI:1666096 from [Marah macrocarpus] |
AT1G19020 | Q8VYY6 | 35.2 | not assigned.unknown | 7.2 | Expressed protein ; supported by full-length cDNA: Ceres: 31015. |
AT1G15670 | Q9LMR5 | 29.5.11.4.3.2 | protein.degradation.ubiquitin.E3.SCF.FBOX | 2.7 | unknown protein ; supported by cDNA: gi_15146331_gb_AY049307.1_ |
AT1G20630 | Q96528 | 21.6 | redox.dismutases and catalases | 2 | hypothetical protein ; supported by cDNA: gi_1518449_gb_U43340.1_ATU43340 |
AT1G35230 | Q8LCE4 | 10.5.1.1 | cell wall.cell wall proteins.AGPs.AGP | 2.2 | hypothetical protein ;supported by full-length cDNA: Ceres:265772. |
AT1G21310 | Q9FS16 | 10.5.4 | cell wall.cell wall proteins.HRGP | 2.2 | hypothetical protein |
AT1G21240 | Q9LMN8 | 30.2.25 | signalling.receptor kinases.wall associated kinase | 3.9 | hypothetical protein |
AT1G52410 | F4ICX9 | 30.3 | signalling.calcium | 3 | myosin-like protein contains Pfam profile: PF00658 Poly-adenylate binding protein, unique domain.; supported by cDNA: gi_15081708_gb_AY048247.1_ |
AT1G52400 | Q9SE50 | 26.3 | misc.gluco-, galacto- and mannosidases | 2.4 | beta-glucosidase, putative identical to GI:6651430 from [Arabidopsis thaliana]; supported by cDNA: gi_14532461_gb_AY039855.1_ |