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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT1G01560
Q9LMM5
30.6
signalling.MAP kinases
3
MAP kinase, putative similar to MAP kinase 5 GI:4239889 from [Zea mays]
AT1G01480
Q06402
17.5.1.1
hormone metabolism.ethylene.synthesis-degradation.1-aminocyclopropane-1-carboxylate synthase
2.2
1-aminocyclopropane-1-carboxylate synthase (ACC synthase) almost identical to 1-aminocyclopropane-1-carboxylate synthase GI:166578 from [Arabidopsis thaliana]; supported by cDNA: gi_166579_gb_M95595.1_ATHACSC
AT1G02360
Q9FZ25
20.1
stress.biotic
3.7
chitinase, putative similar to chitinase GI:1237025 from [Arachis hypogaea]
AT1G02400
Q9FZ21
17.6.1.13
hormone metabolism.gibberelin.synthesis-degradation.GA2 oxidase
2
dioxygenase, putative similar to dioxygenase GI:1666096 from [Marah macrocarpus]
AT1G19020
Q8VYY6
35.2
not assigned.unknown
7.2
Expressed protein ; supported by full-length cDNA: Ceres: 31015.
AT1G15670
Q9LMR5
29.5.11.4.3.2
protein.degradation.ubiquitin.E3.SCF.FBOX
2.7
unknown protein ; supported by cDNA: gi_15146331_gb_AY049307.1_
AT1G20630
Q96528
21.6
redox.dismutases and catalases
2
hypothetical protein ; supported by cDNA: gi_1518449_gb_U43340.1_ATU43340
AT1G35230
Q8LCE4
10.5.1.1
cell wall.cell wall proteins.AGPs.AGP
2.2
hypothetical protein ;supported by full-length cDNA: Ceres:265772.
AT1G21310
Q9FS16
10.5.4
cell wall.cell wall proteins.HRGP
2.2
hypothetical protein
AT1G21240
Q9LMN8
30.2.25
signalling.receptor kinases.wall associated kinase
3.9
hypothetical protein
AT1G52410
F4ICX9
30.3
signalling.calcium
3
myosin-like protein contains Pfam profile: PF00658 Poly-adenylate binding protein, unique domain.; supported by cDNA: gi_15081708_gb_AY048247.1_
AT1G52400
Q9SE50
26.3
misc.gluco-, galacto- and mannosidases
2.4
beta-glucosidase, putative identical to GI:6651430 from [Arabidopsis thaliana]; supported by cDNA: gi_14532461_gb_AY039855.1_
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