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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT3G09350
A8MQ87
35.1.3
not assigned.no ontology.armadillo/beta-catenin repeat family protein
2.8
hypothetical protein predicted by genscan+;supported by full-length cDNA: Ceres:19154.
AT3G10300
Q8W4L0
30.3
signalling.calcium
2.6
unknown protein Pfam HMM hit: EF hand
AT3G01670
Q93XX2
35.2
not assigned.unknown
2.2
unknown protein ; supported by cDNA: gi_16648950_gb_AY059845.1_
AT3G09020
Q9S790
26.2
misc.UDP glucosyl and glucoronyl transferases
3.2
unknown protein identical to GB:AAD56318 (Arabidopsis thaliana)
AT3G09010
Q8LF75
30.2.8.2
signalling.receptor kinases.leucine rich repeat VIII.VIII-2
2.3
putative receptor ser/thr protein kinase similar to receptor kinase GB:S70769 [Arabidopsis thaliana]; supported by full-length cDNA: Ceres: 124301.
AT3G07800
Q9S750
23.3.2.3
nucleotide metabolism.salvage.nucleoside kinases.thymidine kinase
2.2
putative thymidine kinase similar to thymidine kinase GB:AAC31168 [Oryza sativa]; supported by full-length cDNA: Ceres: 19188.
AT3G11480
Q6XMI3
17.8.1.1.7
hormone metabolism.salicylic acid.synthesis-degradation.synthesis.methyl-SA methylesterase
5.5
hypothetical protein similar to hypothetical protein GB:AAD19781 [Arabidopsis thaliana]
AT3G05200
Q8RXX9
29.5.11.4.2
protein.degradation.ubiquitin.E3.RING
2
putative RING-H2 zinc finger protein ATL6 similar to GB:AAD33584 from [Arabidopsis thaliana]; supported by cDNA: gi_4928402_gb_AF132016.1_AF132016
AT3G16430
O04313
17.7.3
hormone metabolism.jasmonate.induced-regulated-responsive-activated
2
jasmonate inducible protein isolog ;supported by full-length cDNA: Ceres:119153.
AT3G16470
O04309
17.7.3
hormone metabolism.jasmonate.induced-regulated-responsive-activated
2.2
putative lectin contains Pfam profile: PF01419 jacalin-like lectin domain; similar to jasmonate inducible protein GB:Y11483 (Brassica napus), myrosinase binding protein GB:BAA84545 (Arabidopsis thaliana);supported by full-length cDNA: Ceres:30003.
AT1G17745
O04130
13.1.5.1.1
amino acid metabolism.synthesis.serine-glycine-cysteine group.serine.phosphoglycerate dehydrogenase
2.3
unknown protein ; supported by full-length cDNA: Ceres: 20582.
AT1G13340
#N/A
35.2
not assigned.unknown
2.5
hypothetical protein predicted by genemark.hmm
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