Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT3G09350 | A8MQ87 | 35.1.3 | not assigned.no ontology.armadillo/beta-catenin repeat family protein | 2.8 | hypothetical protein predicted by genscan+;supported by full-length cDNA: Ceres:19154. |
AT3G10300 | Q8W4L0 | 30.3 | signalling.calcium | 2.6 | unknown protein Pfam HMM hit: EF hand |
AT3G01670 | Q93XX2 | 35.2 | not assigned.unknown | 2.2 | unknown protein ; supported by cDNA: gi_16648950_gb_AY059845.1_ |
AT3G09020 | Q9S790 | 26.2 | misc.UDP glucosyl and glucoronyl transferases | 3.2 | unknown protein identical to GB:AAD56318 (Arabidopsis thaliana) |
AT3G09010 | Q8LF75 | 30.2.8.2 | signalling.receptor kinases.leucine rich repeat VIII.VIII-2 | 2.3 | putative receptor ser/thr protein kinase similar to receptor kinase GB:S70769 [Arabidopsis thaliana]; supported by full-length cDNA: Ceres: 124301. |
AT3G07800 | Q9S750 | 23.3.2.3 | nucleotide metabolism.salvage.nucleoside kinases.thymidine kinase | 2.2 | putative thymidine kinase similar to thymidine kinase GB:AAC31168 [Oryza sativa]; supported by full-length cDNA: Ceres: 19188. |
AT3G11480 | Q6XMI3 | 17.8.1.1.7 | hormone metabolism.salicylic acid.synthesis-degradation.synthesis.methyl-SA methylesterase | 5.5 | hypothetical protein similar to hypothetical protein GB:AAD19781 [Arabidopsis thaliana] |
AT3G05200 | Q8RXX9 | 29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING | 2 | putative RING-H2 zinc finger protein ATL6 similar to GB:AAD33584 from [Arabidopsis thaliana]; supported by cDNA: gi_4928402_gb_AF132016.1_AF132016 |
AT3G16430 | O04313 | 17.7.3 | hormone metabolism.jasmonate.induced-regulated-responsive-activated | 2 | jasmonate inducible protein isolog ;supported by full-length cDNA: Ceres:119153. |
AT3G16470 | O04309 | 17.7.3 | hormone metabolism.jasmonate.induced-regulated-responsive-activated | 2.2 | putative lectin contains Pfam profile: PF01419 jacalin-like lectin domain; similar to jasmonate inducible protein GB:Y11483 (Brassica napus), myrosinase binding protein GB:BAA84545 (Arabidopsis thaliana);supported by full-length cDNA: Ceres:30003. |
AT1G17745 | O04130 | 13.1.5.1.1 | amino acid metabolism.synthesis.serine-glycine-cysteine group.serine.phosphoglycerate dehydrogenase | 2.3 | unknown protein ; supported by full-length cDNA: Ceres: 20582. |
AT1G13340 | #N/A | 35.2 | not assigned.unknown | 2.5 | hypothetical protein predicted by genemark.hmm |