Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT3G11840 | Q9SF15 | 27.3.64 | RNA.regulation of transcription.PHOR1 | 4.2 | hypothetical protein predicted by genscan;supported by full-length cDNA: Ceres:100676. |
AT3G04720 | P43082 | 20.1 | stress.biotic | 2.6 | hevein-like protein precursor (PR-4) identical to hevein-like protein precursor GB:P43082 [Arabidopsis thaliana], similar to wound-induced protein (WIN2) precursor GB:P09762 [Solanum tuberosum]; Pfam HMM hit: chitin_binding proteins;supported by full |
AT3G04010 | Q9SQR1 | 26.4.1 | misc.beta 1,3 glucan hydrolases.glucan endo-1,3-beta-glucosidase | 2.8 | putative beta-1,3-glucanase similar to beta-1,3-glucanase GB:S12402 [Nicotiana sp], GB:CAA03908 [Citrus sinensis], GB:S44364 [Lycopersicon esculentum] |
AT3G04070 | Q84TD6 | 27.3.27 | RNA.regulation of transcription.NAC domain transcription factor family | 2.1 | NAM-like protein (no apical meristem) similar to NAM GB:CAA63101 [Petunia x hybrida] |
AT3G07090 | Q9SFT9 | 35.2 | not assigned.unknown | 2.4 | unknown protein |
AT3G06300 | F4JAU3 | 26.7 | misc.oxidases - copper, flavone etc | 2.3 | unknown protein similar to C-terminal portion of prolyl 4-hydroxylase alpha subunit precursor GB:P54001 [Rattus norvegicus]; supported by full-length cDNA: Ceres: 95931. |
AT3G10640 | Q9LPN5 | 27.3.71 | RNA.regulation of transcription.SNF7 | 2.3 | unknown protein similar to hypothetical protein GB:CAA19586 [Schizosaccharomyces pombe] |
AT3G09940 | Q9SR59 | 21.2.1 | redox.ascorbate and glutathione.ascorbate | 2.5 | putative monodehydroascorbate reductase (NADH) similar to monodehydroascorbate reductase (NADH) GB:JU0182 [Cucumis sativus]; supported by full-length cDNA: Ceres: 11160. |
AT3G01830 | Q9SGI8 | 30.3 | signalling.calcium | 8.9 | hypothetical protein similar to calmodulin-like protein GB:CAB42906 [Arabidopsis thaliana]; Pfam HMM hit: EF hand; supported by full-length cDNA: Ceres: 7252. |
AT3G01970 | Q9S763 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 2.5 | putative WRKY-like transcriptional regulator protein similar to WRKY1 GB:AAC49527 (Petroselinum crispum); supported by full-length cDNA: Ceres: 1415. |
AT3G07390 | Q94BT2 | 17.2.3 | hormone metabolism.auxin.induced-regulated-responsive-activated | 3.1 | unknown protein similar to unknown protein GB:AAC62613 [Arabidopsis thaliana]; supported by cDNA: gi_14532567_gb_AY039908.1_ |
AT3G09410 | Q9SR22 | 10.8.2 | cell wall.pectin*esterases.acetyl esterase | 5.2 | putative pectinacetylesterase similar to pectinacetylesterase precursor GB:CAA67728 [Vigna radiata] |