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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT3G11840
Q9SF15
27.3.64
RNA.regulation of transcription.PHOR1
4.2
hypothetical protein predicted by genscan;supported by full-length cDNA: Ceres:100676.
AT3G04720
P43082
20.1
stress.biotic
2.6
hevein-like protein precursor (PR-4) identical to hevein-like protein precursor GB:P43082 [Arabidopsis thaliana], similar to wound-induced protein (WIN2) precursor GB:P09762 [Solanum tuberosum]; Pfam HMM hit: chitin_binding proteins;supported by full
AT3G04010
Q9SQR1
26.4.1
misc.beta 1,3 glucan hydrolases.glucan endo-1,3-beta-glucosidase
2.8
putative beta-1,3-glucanase similar to beta-1,3-glucanase GB:S12402 [Nicotiana sp], GB:CAA03908 [Citrus sinensis], GB:S44364 [Lycopersicon esculentum]
AT3G04070
Q84TD6
27.3.27
RNA.regulation of transcription.NAC domain transcription factor family
2.1
NAM-like protein (no apical meristem) similar to NAM GB:CAA63101 [Petunia x hybrida]
AT3G07090
Q9SFT9
35.2
not assigned.unknown
2.4
unknown protein
AT3G06300
F4JAU3
26.7
misc.oxidases - copper, flavone etc
2.3
unknown protein similar to C-terminal portion of prolyl 4-hydroxylase alpha subunit precursor GB:P54001 [Rattus norvegicus]; supported by full-length cDNA: Ceres: 95931.
AT3G10640
Q9LPN5
27.3.71
RNA.regulation of transcription.SNF7
2.3
unknown protein similar to hypothetical protein GB:CAA19586 [Schizosaccharomyces pombe]
AT3G09940
Q9SR59
21.2.1
redox.ascorbate and glutathione.ascorbate
2.5
putative monodehydroascorbate reductase (NADH) similar to monodehydroascorbate reductase (NADH) GB:JU0182 [Cucumis sativus]; supported by full-length cDNA: Ceres: 11160.
AT3G01830
Q9SGI8
30.3
signalling.calcium
8.9
hypothetical protein similar to calmodulin-like protein GB:CAB42906 [Arabidopsis thaliana]; Pfam HMM hit: EF hand; supported by full-length cDNA: Ceres: 7252.
AT3G01970
Q9S763
27.3.32
RNA.regulation of transcription.WRKY domain transcription factor family
2.5
putative WRKY-like transcriptional regulator protein similar to WRKY1 GB:AAC49527 (Petroselinum crispum); supported by full-length cDNA: Ceres: 1415.
AT3G07390
Q94BT2
17.2.3
hormone metabolism.auxin.induced-regulated-responsive-activated
3.1
unknown protein similar to unknown protein GB:AAC62613 [Arabidopsis thaliana]; supported by cDNA: gi_14532567_gb_AY039908.1_
AT3G09410
Q9SR22
10.8.2
cell wall.pectin*esterases.acetyl esterase
5.2
putative pectinacetylesterase similar to pectinacetylesterase precursor GB:CAA67728 [Vigna radiata]
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