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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT1G26420
Q9FZC8
26.8
misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases
16
hypothetical protein similar to reticuline oxidase-like protein GB:CAB45850 GI:5262224 from [Arabidopsis thaliana]
AT1G26410
Q9FZC7
26.8
misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases
6.7
unknown protein similar to reticuline oxidase-like protein GB:CAB45850 GI:5262224 from [Arabidopsis thaliana]
AT1G26390
Q9FZC5
26.8
misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases
3.8
hypothetical protein similar to reticuline oxidase-like protein GB:CAB45850 GI:5262224 from [Arabidopsis thaliana]; supported by cDNA: gi_15293132_gb_AY051000.1_
AT1G26380
Q9FZC4
26.8
misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases
23.4
hypothetical protein similar to reticuline oxidase-like protein GB:CAB45850 GI:5262224 from [Arabidopsis thaliana]; supported by cDNA: gi_13430839_gb_AF360332.1_AF360332
AT1G12200
Q9FWW9
26.7
misc.oxidases - copper, flavone etc
2.6
unknown protein similar to unknown protein GB:AAF34848 GI:6997186 from [Arabidopsis thaliana]
AT1G01340
Q9LNJ0
34.22
transport.cyclic nucleotide or calcium regulated channels
2.1
cyclic nucleotide and calmodulin-regulated ion channel, putative similar to cyclic nucleotide and calmodulin-regulated ion channel GB:CAB40128 GI:4581201 from [Arabidopsis thaliana]; supported by cDNA: gi_8515882_gb_AF272002.1_AF272002
AT1G04990
Q94AD9
27.3.11
RNA.regulation of transcription.C2H2 zinc finger family
2
zinc finger protein 2, putative similar to GB:AAD33770 from [Arabidopsis thaliana]; supported by cDNA: gi_15081720_gb_AY048253.1_
AT3G02840
#N/A
20.1
stress.biotic
7.3
unknown protein ;supported by full-length cDNA: Ceres:38495.
AT3G09830
Q9SF86
29.4.1.57
protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII
2.3
putative protein kinase similar to protein kinase (APK1A) GB:Q06548 [Arabidopsis thaliana]; contains Pfam profile: PF00069 Eukaryotic protein kinase domain
AT3G08710
Q9C9Y6
21.1
redox.thioredoxin
2.2
thioredoxin-like protein similar to thioredoxin H-type GB:P29448 [Arabidopsis thaliana]
AT3G08760
Q9C9Y3
29.4
protein.postranslational modification
2.9
putative protein kinase contains Pfam profile: PF00069 Eukaryotic protein kinase domain (2 copies); supported by cDNA: gi_14581444_gb_AY026759.1_
AT3G11820
Q9ZSD4
31.4
cell.vesicle transport
3.3
putative syntaxin contains Pfam profile: PF00804 syntaxin;supported by full-length cDNA: Ceres:38899.
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