Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT1G26420 | Q9FZC8 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | 16 | hypothetical protein similar to reticuline oxidase-like protein GB:CAB45850 GI:5262224 from [Arabidopsis thaliana] |
AT1G26410 | Q9FZC7 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | 6.7 | unknown protein similar to reticuline oxidase-like protein GB:CAB45850 GI:5262224 from [Arabidopsis thaliana] |
AT1G26390 | Q9FZC5 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | 3.8 | hypothetical protein similar to reticuline oxidase-like protein GB:CAB45850 GI:5262224 from [Arabidopsis thaliana]; supported by cDNA: gi_15293132_gb_AY051000.1_ |
AT1G26380 | Q9FZC4 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | 23.4 | hypothetical protein similar to reticuline oxidase-like protein GB:CAB45850 GI:5262224 from [Arabidopsis thaliana]; supported by cDNA: gi_13430839_gb_AF360332.1_AF360332 |
AT1G12200 | Q9FWW9 | 26.7 | misc.oxidases - copper, flavone etc | 2.6 | unknown protein similar to unknown protein GB:AAF34848 GI:6997186 from [Arabidopsis thaliana] |
AT1G01340 | Q9LNJ0 | 34.22 | transport.cyclic nucleotide or calcium regulated channels | 2.1 | cyclic nucleotide and calmodulin-regulated ion channel, putative similar to cyclic nucleotide and calmodulin-regulated ion channel GB:CAB40128 GI:4581201 from [Arabidopsis thaliana]; supported by cDNA: gi_8515882_gb_AF272002.1_AF272002 |
AT1G04990 | Q94AD9 | 27.3.11 | RNA.regulation of transcription.C2H2 zinc finger family | 2 | zinc finger protein 2, putative similar to GB:AAD33770 from [Arabidopsis thaliana]; supported by cDNA: gi_15081720_gb_AY048253.1_ |
AT3G02840 | #N/A | 20.1 | stress.biotic | 7.3 | unknown protein ;supported by full-length cDNA: Ceres:38495. |
AT3G09830 | Q9SF86 | 29.4.1.57 | protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII | 2.3 | putative protein kinase similar to protein kinase (APK1A) GB:Q06548 [Arabidopsis thaliana]; contains Pfam profile: PF00069 Eukaryotic protein kinase domain |
AT3G08710 | Q9C9Y6 | 21.1 | redox.thioredoxin | 2.2 | thioredoxin-like protein similar to thioredoxin H-type GB:P29448 [Arabidopsis thaliana] |
AT3G08760 | Q9C9Y3 | 29.4 | protein.postranslational modification | 2.9 | putative protein kinase contains Pfam profile: PF00069 Eukaryotic protein kinase domain (2 copies); supported by cDNA: gi_14581444_gb_AY026759.1_ |
AT3G11820 | Q9ZSD4 | 31.4 | cell.vesicle transport | 3.3 | putative syntaxin contains Pfam profile: PF00804 syntaxin;supported by full-length cDNA: Ceres:38899. |