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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT3G46930
A0A1I9LS71
29.4
protein.postranslational modification
2.2
RAF43, protein kinase 6-like protein protein kinase 6 - Glycine max,PIR2:S29851
AT3G04910
Q9CAV6
29.4.1
protein.postranslational modification.kinase
n.c.
ZIK4, putative mitogen activated protein kinase kinase similar to mitogen activated protein kinase kinase GB:AAC32599 [Oryza sativa]
AT3G18750
Q8S8Y8
29.4
protein.postranslational modification
n.c.
ZIK5, mitogen activated protein kinase kinase, putative similar to mitogen activated protein kinase kinase GB:AAC32599 from [Oryza sativa]
AT5G41990
Q944Q0
30.6
signalling.MAP kinases
2
ZIK6, MAP kinase ; supported by cDNA: gi_15983508_gb_AF424629.1_AF424629
AT5G55560
Q6ICW6
29.4
protein.postranslational modification
2
ZIK8, putative protein contains similarity to NRK-related kinase
AT1G42990
Q9C7S0
27.3.35
RNA.regulation of transcription.bZIP transcription factor family
1.8
bZIP transcription factor, putative contains Pfam profile: PF00170: bZIP transcription factor; supported by cDNA: gi_15028322_gb_AY045964.1_
AT3G54620
Q9M1G6
27.3.35
RNA.regulation of transcription.bZIP transcription factor family
2
Expressed protein ; supported by cDNA: gi_15451129_gb_AY054645.1_
AT1G22070
Q39234
27.3.35
RNA.regulation of transcription.bZIP transcription factor family
2.7
transcription factor identical to transcription factor GI:304113 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:33016.
AT3G58120
Q9M2K4
27.3.35
RNA.regulation of transcription.bZIP transcription factor family
n.c.
putative protein basic leucine zipper transcription activator shoot-forming PKSF1 - Paulownia kawakamii, EMBL:AF046934;supported by full-length cDNA: Ceres:34553.
AT1G06850
Q8VWG0
27.3.35
RNA.regulation of transcription.bZIP transcription factor family
n.c.
b-Zip DNA binding protein, putative similar to b-Zip DNA binding protein GB:CAB06697 GI:2246376 from [Arabidopsis thaliana]
AT2G18160
Q9SI15
27.3.35
RNA.regulation of transcription.bZIP transcription factor family
-2.2
putative bZIP transcription factor contains a bZIP transcription factor basic domain signature (PDOC00036); supported by cDNA: gi_14335073_gb_AY037216.1_
AT5G15830
#N/A
27.3.35
RNA.regulation of transcription.bZIP transcription factor family
-3.4
bZIP DNA-binding protein-like putative bZIP DNA-binding protein - Capsicum chinense, EMBL:AF127797
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