Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT3G46930 | A0A1I9LS71 | 29.4 | protein.postranslational modification | 2.2 | RAF43, protein kinase 6-like protein protein kinase 6 - Glycine max,PIR2:S29851 |
AT3G04910 | Q9CAV6 | 29.4.1 | protein.postranslational modification.kinase | n.c. | ZIK4, putative mitogen activated protein kinase kinase similar to mitogen activated protein kinase kinase GB:AAC32599 [Oryza sativa] |
AT3G18750 | Q8S8Y8 | 29.4 | protein.postranslational modification | n.c. | ZIK5, mitogen activated protein kinase kinase, putative similar to mitogen activated protein kinase kinase GB:AAC32599 from [Oryza sativa] |
AT5G41990 | Q944Q0 | 30.6 | signalling.MAP kinases | 2 | ZIK6, MAP kinase ; supported by cDNA: gi_15983508_gb_AF424629.1_AF424629 |
AT5G55560 | Q6ICW6 | 29.4 | protein.postranslational modification | 2 | ZIK8, putative protein contains similarity to NRK-related kinase |
AT1G42990 | Q9C7S0 | 27.3.35 | RNA.regulation of transcription.bZIP transcription factor family | 1.8 | bZIP transcription factor, putative contains Pfam profile: PF00170: bZIP transcription factor; supported by cDNA: gi_15028322_gb_AY045964.1_ |
AT3G54620 | Q9M1G6 | 27.3.35 | RNA.regulation of transcription.bZIP transcription factor family | 2 | Expressed protein ; supported by cDNA: gi_15451129_gb_AY054645.1_ |
AT1G22070 | Q39234 | 27.3.35 | RNA.regulation of transcription.bZIP transcription factor family | 2.7 | transcription factor identical to transcription factor GI:304113 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:33016. |
AT3G58120 | Q9M2K4 | 27.3.35 | RNA.regulation of transcription.bZIP transcription factor family | n.c. | putative protein basic leucine zipper transcription activator shoot-forming PKSF1 - Paulownia kawakamii, EMBL:AF046934;supported by full-length cDNA: Ceres:34553. |
AT1G06850 | Q8VWG0 | 27.3.35 | RNA.regulation of transcription.bZIP transcription factor family | n.c. | b-Zip DNA binding protein, putative similar to b-Zip DNA binding protein GB:CAB06697 GI:2246376 from [Arabidopsis thaliana] |
AT2G18160 | Q9SI15 | 27.3.35 | RNA.regulation of transcription.bZIP transcription factor family | -2.2 | putative bZIP transcription factor contains a bZIP transcription factor basic domain signature (PDOC00036); supported by cDNA: gi_14335073_gb_AY037216.1_ |
AT5G15830 | #N/A | 27.3.35 | RNA.regulation of transcription.bZIP transcription factor family | -3.4 | bZIP DNA-binding protein-like putative bZIP DNA-binding protein - Capsicum chinense, EMBL:AF127797 |