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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT1G48210
F4HWU0
29.4.1.58
protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VIII
2.8
Pto kinase interactor 1, putative similar to GB:AAC61805 from [Lycopersicon esculentum] (Cell 83 (6), 925-935 (1995)); supported by cDNA: gi_15451195_gb_AY054678.1_
AT1G17500
Q9LNQ4
34.99
transport.misc
2.6
P-type ATPase, putative similar to GB:AAC63461 from [Homo sapiens] (Nat. Genet. 18 (3), 219-224 (1998))
AT1G49000
Q9M9A2
35.2
not assigned.unknown
4.9
unknown protein
AT1G06160
Q9LND1
17.5.2
hormone metabolism.ethylene.signal transduction
2.2
ethylene response factor, putative similar to ethylene response factor 1 GB:AAD03544 GI:4128208 from [Arabidopsis thaliana]
AT1G06180
Q9LNC9
27.3.25
RNA.regulation of transcription.MYB domain transcription factor family
2.3
MYB-related protein identical to GB:CAA90748 GI:1263093 from [Arabidopsis thaliana]
AT1G78410
Q8VYI5
35.1
not assigned.no ontology
5.5
hypothetical protein predicted by genemark.hmm;supported by full-length cDNA: Ceres:157.
AT1G06870
Q9M9Z2
29.5
protein.degradation
2
chloroplast thylakoidal processing peptidase, putative similar to chloroplast thylakoidal processing peptidase GB:CAA71502 GI:2769566 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:15392.
AT1G21550
Q9LPK5
30.3
signalling.calcium
3.9
unknown protein contains similarity to calcium-binding protein GB:CAB63264 GI:6580549 from [Lotus japonicus]; supported by cDNA: gi_13605536_gb_AF361594.1_AF361594
AT1G02450
Q9FNZ5
27.3.99
RNA.regulation of transcription.unclassified
2
unknown protein
AT1G21520
#N/A
35.2
not assigned.unknown
2.3
hypothetical protein predicted by genemark.hmm
AT1G53440
C0LGG9
30.2.8.2
signalling.receptor kinases.leucine rich repeat VIII.VIII-2
2.3
receptor-like serine/threonine kinase, putative similar to receptor-like serine/threonine kinase GB:AAC50043 GI:2465923 from [Arabidopsis thaliana]
AT1G53430
C0LGG8
30.2.8.2
signalling.receptor kinases.leucine rich repeat VIII.VIII-2
2.4
receptor-like serine/threonine kinase, putative similar to receptor-like serine/threonine kinase GB:AAC50043 GI:2465923 from [Arabidopsis thaliana]
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