Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT1G48210 | F4HWU0 | 29.4.1.58 | protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VIII | 2.8 | Pto kinase interactor 1, putative similar to GB:AAC61805 from [Lycopersicon esculentum] (Cell 83 (6), 925-935 (1995)); supported by cDNA: gi_15451195_gb_AY054678.1_ |
AT1G17500 | Q9LNQ4 | 34.99 | transport.misc | 2.6 | P-type ATPase, putative similar to GB:AAC63461 from [Homo sapiens] (Nat. Genet. 18 (3), 219-224 (1998)) |
AT1G49000 | Q9M9A2 | 35.2 | not assigned.unknown | 4.9 | unknown protein |
AT1G06160 | Q9LND1 | 17.5.2 | hormone metabolism.ethylene.signal transduction | 2.2 | ethylene response factor, putative similar to ethylene response factor 1 GB:AAD03544 GI:4128208 from [Arabidopsis thaliana] |
AT1G06180 | Q9LNC9 | 27.3.25 | RNA.regulation of transcription.MYB domain transcription factor family | 2.3 | MYB-related protein identical to GB:CAA90748 GI:1263093 from [Arabidopsis thaliana] |
AT1G78410 | Q8VYI5 | 35.1 | not assigned.no ontology | 5.5 | hypothetical protein predicted by genemark.hmm;supported by full-length cDNA: Ceres:157. |
AT1G06870 | Q9M9Z2 | 29.5 | protein.degradation | 2 | chloroplast thylakoidal processing peptidase, putative similar to chloroplast thylakoidal processing peptidase GB:CAA71502 GI:2769566 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:15392. |
AT1G21550 | Q9LPK5 | 30.3 | signalling.calcium | 3.9 | unknown protein contains similarity to calcium-binding protein GB:CAB63264 GI:6580549 from [Lotus japonicus]; supported by cDNA: gi_13605536_gb_AF361594.1_AF361594 |
AT1G02450 | Q9FNZ5 | 27.3.99 | RNA.regulation of transcription.unclassified | 2 | unknown protein |
AT1G21520 | #N/A | 35.2 | not assigned.unknown | 2.3 | hypothetical protein predicted by genemark.hmm |
AT1G53440 | C0LGG9 | 30.2.8.2 | signalling.receptor kinases.leucine rich repeat VIII.VIII-2 | 2.3 | receptor-like serine/threonine kinase, putative similar to receptor-like serine/threonine kinase GB:AAC50043 GI:2465923 from [Arabidopsis thaliana] |
AT1G53430 | C0LGG8 | 30.2.8.2 | signalling.receptor kinases.leucine rich repeat VIII.VIII-2 | 2.4 | receptor-like serine/threonine kinase, putative similar to receptor-like serine/threonine kinase GB:AAC50043 GI:2465923 from [Arabidopsis thaliana] |