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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT1G74080
Q9C9C8
27.3.25
RNA.regulation of transcription.MYB domain transcription factor family
2.8
putative transcription factor similar to OSMYB1 GB:BAA23337 from [Oryza sativa]; supported by cDNA: gi_15375306_gb_AF371983.2_AF371983
AT1G72520
Q9FNX8
17.7.1.2
hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase
3
putative lipoxygenase similar to lipoxygenase GB:CAB56692 [Arabidopsis thaliana]; supported by cDNA: gi_15810254_gb_AY056166.1_
AT1G69930
Q9CAS6
26.9
misc.glutathione S transferases
5.2
putative glutathione transferase similar to glutathione transferase GB:CAA09188 [Alopecurus myosuroides]
AT1G69920
Q6NMS0
26.9
misc.glutathione S transferases
7.7
putative glutathione transferase similar to glutathione transferase GB:CAA09188 [Alopecurus myosuroides]
AT1G69830
Q94A41
2.2.2.1.1
major CHO metabolism.degradation.starch.starch cleavage.alpha amylase
2.6
putative alpha-amylase similar to alpha-amylase GB:AAA91884 [Solanum tuberosum]; supported by cDNA: gi_15215737_gb_AY050398.1_
AT1G11050
O04086
30.2.23
signalling.receptor kinases.RKF3 like
2.5
Ser/Thr protein kinase isolog
AT2G47240
O22898
11.1.9
lipid metabolism.FA synthesis and FA elongation.long chain fatty acid CoA ligase
2.4
putative acyl-CoA synthetase ; supported by cDNA: gi_15912204_gb_AY056380.1_
AT2G43620
O22841
20.1
stress.biotic
8.5
putative endochitinase
AT1G53390
Q9MAG3
34.16
transport.ABC transporters and multidrug resistance systems
2.2
hypothetical protein contains Pfam profile: PF00005 ABC transporter
AT1G08050
Q9LN03
29.5.11.4.2
protein.degradation.ubiquitin.E3.RING
3.3
unknown protein
AT1G19360
Q9LN62
35.2
not assigned.unknown
2.1
unknown protein ;supported by full-length cDNA: Ceres:41461.
AT1G32350
Q8LEE7
9.4
mitochondrial electron transport / ATP synthesis.alternative oxidase
5.9
oxidase, putative similar to oxidase GB:AAA32870 GI:166876 from (Arabidopsis thaliana);supported by full-length cDNA: Ceres:152458.
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