Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT1G74080 | Q9C9C8 | 27.3.25 | RNA.regulation of transcription.MYB domain transcription factor family | 2.8 | putative transcription factor similar to OSMYB1 GB:BAA23337 from [Oryza sativa]; supported by cDNA: gi_15375306_gb_AF371983.2_AF371983 |
AT1G72520 | Q9FNX8 | 17.7.1.2 | hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase | 3 | putative lipoxygenase similar to lipoxygenase GB:CAB56692 [Arabidopsis thaliana]; supported by cDNA: gi_15810254_gb_AY056166.1_ |
AT1G69930 | Q9CAS6 | 26.9 | misc.glutathione S transferases | 5.2 | putative glutathione transferase similar to glutathione transferase GB:CAA09188 [Alopecurus myosuroides] |
AT1G69920 | Q6NMS0 | 26.9 | misc.glutathione S transferases | 7.7 | putative glutathione transferase similar to glutathione transferase GB:CAA09188 [Alopecurus myosuroides] |
AT1G69830 | Q94A41 | 2.2.2.1.1 | major CHO metabolism.degradation.starch.starch cleavage.alpha amylase | 2.6 | putative alpha-amylase similar to alpha-amylase GB:AAA91884 [Solanum tuberosum]; supported by cDNA: gi_15215737_gb_AY050398.1_ |
AT1G11050 | O04086 | 30.2.23 | signalling.receptor kinases.RKF3 like | 2.5 | Ser/Thr protein kinase isolog |
AT2G47240 | O22898 | 11.1.9 | lipid metabolism.FA synthesis and FA elongation.long chain fatty acid CoA ligase | 2.4 | putative acyl-CoA synthetase ; supported by cDNA: gi_15912204_gb_AY056380.1_ |
AT2G43620 | O22841 | 20.1 | stress.biotic | 8.5 | putative endochitinase |
AT1G53390 | Q9MAG3 | 34.16 | transport.ABC transporters and multidrug resistance systems | 2.2 | hypothetical protein contains Pfam profile: PF00005 ABC transporter |
AT1G08050 | Q9LN03 | 29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING | 3.3 | unknown protein |
AT1G19360 | Q9LN62 | 35.2 | not assigned.unknown | 2.1 | unknown protein ;supported by full-length cDNA: Ceres:41461. |
AT1G32350 | Q8LEE7 | 9.4 | mitochondrial electron transport / ATP synthesis.alternative oxidase | 5.9 | oxidase, putative similar to oxidase GB:AAA32870 GI:166876 from (Arabidopsis thaliana);supported by full-length cDNA: Ceres:152458. |