Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT1G73800 | #N/A | #N/A | #N/A | 2.8 | Expressed protein ; supported by cDNA: gi_16648699_gb_AY058126.1_ |
AT1G78210 | Q9C9R1 | 35.1 | not assigned.no ontology | 2.5 | hypothetical protein |
AT1G73805 | Q9C9T2 | 30.3 | signalling.calcium | 4 | putative calmodulin-binding protein similar to calmodulin-binding protein GB:AAB37246 [Nicotiana tabacum] |
AT1G74590 | Q9CA57 | 26.9 | misc.glutathione S transferases | 6.5 | putative glutathione S-transferase similar to putative glutathione S-transferase GB:CAA10060 [Arabidopsis thaliana]; contains Pfam profile: PF00043 Glutathione S-transferases;supported by full-length cDNA: Ceres:40734. |
AT1G74360 | C0LGJ1 | 17.3.2.1 | hormone metabolism.brassinosteroid.signal transduction.BRI | 5.7 | putative receptor protein kinase similar to brassinosteroid insensitive 1 GB:AAC49810 (putative receptor protein kinase); contains Pfam profiles: PF00560 Leucine Rich Repeat (17 repeats), PF00069 Eukaryotic protein kinase domain; supported by cDNA: g |
AT1G63720 | Q93W23 | 35.1 | not assigned.no ontology | 3.8 | hypothetical protein similar to putative protein GB:CAA18164 [Arabidopsis thaliana]; supported by cDNA: gi_13878144_gb_AF370335.1_AF370335 |
AT1G74310 | P42730 | 20.2.1 | stress.abiotic.heat | 2.6 | heat shock protein 101 (HSP101) identical to heat shock protein 101 GI:6715468 GB:AAF26423 from [Arabidopsis thaliana] |
AT1G80440 | Q9M8L2 | 29.5.11.4.3.2 | protein.degradation.ubiquitin.E3.SCF.FBOX | 2.2 | unknown protein contains two Kelch motifs; supported by full-length cDNA: Ceres: 32885. |
AT1G80280 | Q56WC9 | 35.1 | not assigned.no ontology | 2 | unknown protein contains Pfam profile: PF00561 alpha/beta hydrolase fold |
AT1G63830 | Q9CAJ7 | 35.1.42 | not assigned.no ontology.proline rich family | 3 | unknown protein similar to putative protein GB:CAA20468 [Arabidopsis thaliana] |
AT1G70530 | Q9CAL2 | 30.2.17 | signalling.receptor kinases.DUF 26 | 2.4 | putative protein kinase similar to C-terminal region of s-receptor kinase precursor GB:JQ1677 [Brassica napus]; Pfam HMM hit: Eukaryotic protein kinase domain |
AT1G74100 | Q9C9D0 | 16.5.1.1.3.3 | secondary metabolism.sulfur-containing.glucosinolates.synthesis.indole.indole-3-methyl-desulfoglucosinolate sulfotransferase | 2.6 | putative flavonol sulfotransferase similar to flavonol 4 -sulfotransferase GB:P52837 from [Flaveria chloraefolia];supported by full-length cDNA: Ceres:36020. |