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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT1G73800
#N/A
#N/A
#N/A
2.8
Expressed protein ; supported by cDNA: gi_16648699_gb_AY058126.1_
AT1G78210
Q9C9R1
35.1
not assigned.no ontology
2.5
hypothetical protein
AT1G73805
Q9C9T2
30.3
signalling.calcium
4
putative calmodulin-binding protein similar to calmodulin-binding protein GB:AAB37246 [Nicotiana tabacum]
AT1G74590
Q9CA57
26.9
misc.glutathione S transferases
6.5
putative glutathione S-transferase similar to putative glutathione S-transferase GB:CAA10060 [Arabidopsis thaliana]; contains Pfam profile: PF00043 Glutathione S-transferases;supported by full-length cDNA: Ceres:40734.
AT1G74360
C0LGJ1
17.3.2.1
hormone metabolism.brassinosteroid.signal transduction.BRI
5.7
putative receptor protein kinase similar to brassinosteroid insensitive 1 GB:AAC49810 (putative receptor protein kinase); contains Pfam profiles: PF00560 Leucine Rich Repeat (17 repeats), PF00069 Eukaryotic protein kinase domain; supported by cDNA: g
AT1G63720
Q93W23
35.1
not assigned.no ontology
3.8
hypothetical protein similar to putative protein GB:CAA18164 [Arabidopsis thaliana]; supported by cDNA: gi_13878144_gb_AF370335.1_AF370335
AT1G74310
P42730
20.2.1
stress.abiotic.heat
2.6
heat shock protein 101 (HSP101) identical to heat shock protein 101 GI:6715468 GB:AAF26423 from [Arabidopsis thaliana]
AT1G80440
Q9M8L2
29.5.11.4.3.2
protein.degradation.ubiquitin.E3.SCF.FBOX
2.2
unknown protein contains two Kelch motifs; supported by full-length cDNA: Ceres: 32885.
AT1G80280
Q56WC9
35.1
not assigned.no ontology
2
unknown protein contains Pfam profile: PF00561 alpha/beta hydrolase fold
AT1G63830
Q9CAJ7
35.1.42
not assigned.no ontology.proline rich family
3
unknown protein similar to putative protein GB:CAA20468 [Arabidopsis thaliana]
AT1G70530
Q9CAL2
30.2.17
signalling.receptor kinases.DUF 26
2.4
putative protein kinase similar to C-terminal region of s-receptor kinase precursor GB:JQ1677 [Brassica napus]; Pfam HMM hit: Eukaryotic protein kinase domain
AT1G74100
Q9C9D0
16.5.1.1.3.3
secondary metabolism.sulfur-containing.glucosinolates.synthesis.indole.indole-3-methyl-desulfoglucosinolate sulfotransferase
2.6
putative flavonol sulfotransferase similar to flavonol 4 -sulfotransferase GB:P52837 from [Flaveria chloraefolia];supported by full-length cDNA: Ceres:36020.
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