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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT1G21750
Q9XI01
21.1.1
redox.thioredoxin.PDIL
2.5
putative protein disulfide isomerase precursor Similar to gb|Z11499 protein disulfide isomerase from Medicago sativa. ESTs gb|AI099693, gb|R65226, gb|AA657311, gb|T43068, gb|T42754, gb|T14005, gb|T76445, gb|H36733, gb|T43168 and gb|T20649 come from thi
AT1G17170
Q9SHH6
26.9
misc.glutathione S transferases
3.1
putative glutathione transferase One of three repeated putative glutathione transferases. 72% identical to glutathione transferase [Arabidopsis thaliana] (gi|4006934)
AT1G15430
Q9C5E6
35.2
not assigned.unknown
2.7
hypothetical protein predicted by genscan+; supported by cDNA: gi_15293248_gb_AY051058.1_
AT1G06620
Q84MB3
21.2
redox.ascorbate and glutathione
2.3
oxidoreductase, putative contains Pfam profile: PF00671 Iron/Ascorbate oxidoreductase family
AT1G62763
#N/A
#N/A
#N/A
2.9
hypothetical protein
AT1G71400
Q9C9H7
20.1.7
stress.biotic.PR-proteins
2.4
putative disease resistance protein similar to Cf-4 GB:CAA05268 from (Lycopersicon hirsutum)
AT1G76470
F4I2E5
16.2
secondary metabolism.phenylpropanoids
2.4
putative cinnamoyl-CoA reductase similar to cinnamoyl-CoA reductase GB:CAA56103 [Eucalyptus gunnii]; contains non-consensus GG acceptor splice site at exon 4
AT1G76600
Q9C9J8
35.2
not assigned.unknown
2.3
unknown protein ;supported by full-length cDNA: Ceres:29624.
AT1G76410
Q8LC69
29.5.11.4.2
protein.degradation.ubiquitin.E3.RING
2
putative RING zinc finger protein contains Pfam profile: PF00097 Zinc finger, C3HC4 type (RING finger); supported by full-length cDNA: Ceres: 27464.
AT1G67920
Q9C9V8
35.2
not assigned.unknown
2.2
unknown protein ;supported by full-length cDNA: Ceres:13102.
AT1G67980
Q9C9W3
16.2.1.6
secondary metabolism.phenylpropanoids.lignin biosynthesis.CCoAOMT
3.3
putative S-adenosyl-L-methionine:trans-caffeoyl-Coenzyme A 3-O-methyltransferase similar to S-adenosyl-L-methionine:trans-caffeoyl-Coenzyme A 3-O-methyltransferase GB:AAA62426 [Arabidopsis thaliana] (function=disease resistance); supported by cDNA: gi_
AT1G68765
Q8LAD7
17.5.3
hormone metabolism.ethylene.induced-regulated-responsive-activated
3.4
Expressed protein ; supported by full-length cDNA: Ceres: 39198.
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