Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT1G21750 | Q9XI01 | 21.1.1 | redox.thioredoxin.PDIL | 2.5 | putative protein disulfide isomerase precursor Similar to gb|Z11499 protein disulfide isomerase from Medicago sativa. ESTs gb|AI099693, gb|R65226, gb|AA657311, gb|T43068, gb|T42754, gb|T14005, gb|T76445, gb|H36733, gb|T43168 and gb|T20649 come from thi |
AT1G17170 | Q9SHH6 | 26.9 | misc.glutathione S transferases | 3.1 | putative glutathione transferase One of three repeated putative glutathione transferases. 72% identical to glutathione transferase [Arabidopsis thaliana] (gi|4006934) |
AT1G15430 | Q9C5E6 | 35.2 | not assigned.unknown | 2.7 | hypothetical protein predicted by genscan+; supported by cDNA: gi_15293248_gb_AY051058.1_ |
AT1G06620 | Q84MB3 | 21.2 | redox.ascorbate and glutathione | 2.3 | oxidoreductase, putative contains Pfam profile: PF00671 Iron/Ascorbate oxidoreductase family |
AT1G62763 | #N/A | #N/A | #N/A | 2.9 | hypothetical protein |
AT1G71400 | Q9C9H7 | 20.1.7 | stress.biotic.PR-proteins | 2.4 | putative disease resistance protein similar to Cf-4 GB:CAA05268 from (Lycopersicon hirsutum) |
AT1G76470 | F4I2E5 | 16.2 | secondary metabolism.phenylpropanoids | 2.4 | putative cinnamoyl-CoA reductase similar to cinnamoyl-CoA reductase GB:CAA56103 [Eucalyptus gunnii]; contains non-consensus GG acceptor splice site at exon 4 |
AT1G76600 | Q9C9J8 | 35.2 | not assigned.unknown | 2.3 | unknown protein ;supported by full-length cDNA: Ceres:29624. |
AT1G76410 | Q8LC69 | 29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING | 2 | putative RING zinc finger protein contains Pfam profile: PF00097 Zinc finger, C3HC4 type (RING finger); supported by full-length cDNA: Ceres: 27464. |
AT1G67920 | Q9C9V8 | 35.2 | not assigned.unknown | 2.2 | unknown protein ;supported by full-length cDNA: Ceres:13102. |
AT1G67980 | Q9C9W3 | 16.2.1.6 | secondary metabolism.phenylpropanoids.lignin biosynthesis.CCoAOMT | 3.3 | putative S-adenosyl-L-methionine:trans-caffeoyl-Coenzyme A 3-O-methyltransferase similar to S-adenosyl-L-methionine:trans-caffeoyl-Coenzyme A 3-O-methyltransferase GB:AAA62426 [Arabidopsis thaliana] (function=disease resistance); supported by cDNA: gi_ |
AT1G68765 | Q8LAD7 | 17.5.3 | hormone metabolism.ethylene.induced-regulated-responsive-activated | 3.4 | Expressed protein ; supported by full-length cDNA: Ceres: 39198. |