Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT1G56060 | A0A178WF56 | 35.2 | not assigned.unknown | 5.8 | hypothetical protein predicted by genemark.hmm |
AT1G02930 | P42760 | 26.9 | misc.glutathione S transferases | 2.6 | glutathione S-transferase, putative similar to glutathione S-transferase GI:860955 from [Hyoscyamus muticus]; supported by cDNA: gi_15215607_gb_AY050332.1_ |
AT1G74710 | Q9S7H8 | 18.5.2.1 | Co-factor and vitamine metabolism.folate & vitamine K.vitamine K.isochorismate synthase | 6.7 | isochorismate synthase (icsI) identical to isochorismate synthase (icsI) GB:AF078080 (catalyzes chorismic acid to isochorismic acid Plant Physiol. 118 (4), 1536 (1998)); supported by cDNA: gi_3348076_gb_AF078080.1_AF078080 |
AT1G77810 | Q6NQB7 | 29.7 | protein.glycosylation | 2.2 | Avr9 elicitor response protein, putative similar to Avr9 elicitor response protein GI:4138265 from [Nicotiana tabacum] |
AT1G68690 | Q9SX31 | 30.2.22 | signalling.receptor kinases.proline extensin like | 3.5 | protein kinase, putative similar to protein kinase 1 GB:BAA94509 GI:7573596 from [Populus nigra]; supported by cDNA: gi_14334805_gb_AY035076.1_ |
AT1G68620 | Q9SX25 | 11.9.3.2 | lipid metabolism.lipid degradation.lysophospholipases.carboxylesterase | 3.1 | unknown protein ; supported by cDNA: gi_14335125_gb_AY037242.1_ |
AT1G48370 | Q6R3K4 | 34.13 | transport.peptides and oligopeptides | 2.4 | hypothetical protein predicted by genscan+; supported by cDNA: gi_14517529_gb_AY039600.1_ |
AT1G70830 | Q9SSK9 | 20.1 | stress.biotic | 3.3 | hypothetical protein similar to putative ripening-related protein GI:7406710 from [Vitis vinifera] |
AT1G64170 | Q1HDT3 | 34.12 | transport.metal | 2.1 | hypothetical protein similar to hypothetical protein GB:AAF24561 GI:6692096 from [Arabidopsis thaliana] |
AT1G72900 | Q9SSN6 | 20.1.7 | stress.biotic.PR-proteins | 3.7 | virus resistance protein, putative similar to virus resistance protein GI:558886 from [Nicotiana glutinosa] |
AT1G72940 | Q9SSN2 | 20.1.7 | stress.biotic.PR-proteins | 2 | disease resistance protein, putative similar to disease resistance protein GI:9758876 from [Arabidopsis thaliana] |
AT1G47710 | Q9S7T8 | 29.5.5 | protein.degradation.serine protease | 2.1 | serpin, putative similar to serpin GB:X95277 GI:1197576 from (Hordeum vulgare) |