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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT1G56060
A0A178WF56
35.2
not assigned.unknown
5.8
hypothetical protein predicted by genemark.hmm
AT1G02930
P42760
26.9
misc.glutathione S transferases
2.6
glutathione S-transferase, putative similar to glutathione S-transferase GI:860955 from [Hyoscyamus muticus]; supported by cDNA: gi_15215607_gb_AY050332.1_
AT1G74710
Q9S7H8
18.5.2.1
Co-factor and vitamine metabolism.folate & vitamine K.vitamine K.isochorismate synthase
6.7
isochorismate synthase (icsI) identical to isochorismate synthase (icsI) GB:AF078080 (catalyzes chorismic acid to isochorismic acid Plant Physiol. 118 (4), 1536 (1998)); supported by cDNA: gi_3348076_gb_AF078080.1_AF078080
AT1G77810
Q6NQB7
29.7
protein.glycosylation
2.2
Avr9 elicitor response protein, putative similar to Avr9 elicitor response protein GI:4138265 from [Nicotiana tabacum]
AT1G68690
Q9SX31
30.2.22
signalling.receptor kinases.proline extensin like
3.5
protein kinase, putative similar to protein kinase 1 GB:BAA94509 GI:7573596 from [Populus nigra]; supported by cDNA: gi_14334805_gb_AY035076.1_
AT1G68620
Q9SX25
11.9.3.2
lipid metabolism.lipid degradation.lysophospholipases.carboxylesterase
3.1
unknown protein ; supported by cDNA: gi_14335125_gb_AY037242.1_
AT1G48370
Q6R3K4
34.13
transport.peptides and oligopeptides
2.4
hypothetical protein predicted by genscan+; supported by cDNA: gi_14517529_gb_AY039600.1_
AT1G70830
Q9SSK9
20.1
stress.biotic
3.3
hypothetical protein similar to putative ripening-related protein GI:7406710 from [Vitis vinifera]
AT1G64170
Q1HDT3
34.12
transport.metal
2.1
hypothetical protein similar to hypothetical protein GB:AAF24561 GI:6692096 from [Arabidopsis thaliana]
AT1G72900
Q9SSN6
20.1.7
stress.biotic.PR-proteins
3.7
virus resistance protein, putative similar to virus resistance protein GI:558886 from [Nicotiana glutinosa]
AT1G72940
Q9SSN2
20.1.7
stress.biotic.PR-proteins
2
disease resistance protein, putative similar to disease resistance protein GI:9758876 from [Arabidopsis thaliana]
AT1G47710
Q9S7T8
29.5.5
protein.degradation.serine protease
2.1
serpin, putative similar to serpin GB:X95277 GI:1197576 from (Hordeum vulgare)
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