Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT1G15520 | Q9M9E1 | 34.16 | transport.ABC transporters and multidrug resistance systems | 9.6 | ABC transporter, putative similar to ABC transporter GI:9279716 from [Arabidopsis thaliana] |
AT1G76260 | Q6NPN9 | 35.1 | not assigned.no ontology | 2 | unknown protein |
AT1G16090 | F4I2T5 | 29.4 | protein.postranslational modification | 3.8 | hypothetical protein contains similarity to wall-associated kinase 2 GI:4826399 from [Arabidopsis thaliana] |
AT1G80840 | Q9SAH7 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 7 | transcription factor, putative similar to WRKY transcription factor GB:BAA87058 GI:6472585 from [Nicotiana tabacum];supported by full-length cDNA: Ceres:6437. |
AT1G80820 | Q9SAH9 | 16.2.1.7 | secondary metabolism.phenylpropanoids.lignin biosynthesis.CCR1 | 2.8 | cinnamoyl CoA reductase, putative similar to cinnamoyl CoA reductase GB:AAF43141 GI:7239228 from [Populus tremuloides]; supported by full-length cDNA: Ceres: 32255. |
AT1G80920 | Q9SAG8 | 20.2.1 | stress.abiotic.heat | 2.1 | J8-like protein similar to DnaJ homologue J8 GB:AAC72399 GI:3851670 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:4150. |
AT1G22410 | Q9SK84 | 13.1.6.1.1 | amino acid metabolism.synthesis.aromatic aa.chorismate.3-deoxy-D-arabino-heptulosonate 7-phosphate synthase | 2.2 | 3-deoxy-D-arabino-heptulosonate 7-phosphate, putative similar to 3-deoxy-D-arabino-heptulosonate 7-phosphate GI:170224 from [Nicotiana tabacum] |
AT1G22400 | Q9SK82 | 17.4.1 | hormone metabolism.cytokinin.synthesis-degradation | 4 | UDP-glucose glucosyltransferase, putative similar to UDP-glucose glucosyltransferase GI:6561805 from [Sorghum bicolor] |
AT1G64470 | #N/A | 29.5.11 | protein.degradation.ubiquitin | 3.1 | ubiquitin, putative similar to poly-ubiquitin GB:AAC13691 GI:3047318 from [Pyricularia grisea] |
AT1G64610 | Q8VZK1 | 35.1 | not assigned.no ontology | 2.9 | hypothetical protein predicted by genemark.hmm |
AT1G35580 | Q9LQF2 | 2.2.1.3.1 | major CHO metabolism.degradation.sucrose.invertases.neutral | 2.1 | invertase, putative similar to neutral invertase GB:76145 GI:4200165 from [Daucus carota] |
AT1G59590 | Q9SLT9 | 35.1 | not assigned.no ontology | 2.4 | hypothetical protein predicted by genemark.hmm;supported by full-length cDNA: Ceres:99553. |