top of page
Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

​

Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

​

AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT1G15520
Q9M9E1
34.16
transport.ABC transporters and multidrug resistance systems
9.6
ABC transporter, putative similar to ABC transporter GI:9279716 from [Arabidopsis thaliana]
AT1G76260
Q6NPN9
35.1
not assigned.no ontology
2
unknown protein
AT1G16090
F4I2T5
29.4
protein.postranslational modification
3.8
hypothetical protein contains similarity to wall-associated kinase 2 GI:4826399 from [Arabidopsis thaliana]
AT1G80840
Q9SAH7
27.3.32
RNA.regulation of transcription.WRKY domain transcription factor family
7
transcription factor, putative similar to WRKY transcription factor GB:BAA87058 GI:6472585 from [Nicotiana tabacum];supported by full-length cDNA: Ceres:6437.
AT1G80820
Q9SAH9
16.2.1.7
secondary metabolism.phenylpropanoids.lignin biosynthesis.CCR1
2.8
cinnamoyl CoA reductase, putative similar to cinnamoyl CoA reductase GB:AAF43141 GI:7239228 from [Populus tremuloides]; supported by full-length cDNA: Ceres: 32255.
AT1G80920
Q9SAG8
20.2.1
stress.abiotic.heat
2.1
J8-like protein similar to DnaJ homologue J8 GB:AAC72399 GI:3851670 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:4150.
AT1G22410
Q9SK84
13.1.6.1.1
amino acid metabolism.synthesis.aromatic aa.chorismate.3-deoxy-D-arabino-heptulosonate 7-phosphate synthase
2.2
3-deoxy-D-arabino-heptulosonate 7-phosphate, putative similar to 3-deoxy-D-arabino-heptulosonate 7-phosphate GI:170224 from [Nicotiana tabacum]
AT1G22400
Q9SK82
17.4.1
hormone metabolism.cytokinin.synthesis-degradation
4
UDP-glucose glucosyltransferase, putative similar to UDP-glucose glucosyltransferase GI:6561805 from [Sorghum bicolor]
AT1G64470
#N/A
29.5.11
protein.degradation.ubiquitin
3.1
ubiquitin, putative similar to poly-ubiquitin GB:AAC13691 GI:3047318 from [Pyricularia grisea]
AT1G64610
Q8VZK1
35.1
not assigned.no ontology
2.9
hypothetical protein predicted by genemark.hmm
AT1G35580
Q9LQF2
2.2.1.3.1
major CHO metabolism.degradation.sucrose.invertases.neutral
2.1
invertase, putative similar to neutral invertase GB:76145 GI:4200165 from [Daucus carota]
AT1G59590
Q9SLT9
35.1
not assigned.no ontology
2.4
hypothetical protein predicted by genemark.hmm;supported by full-length cDNA: Ceres:99553.
bottom of page