Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT1G21120 | Q9LPU7 | 26.6 | misc.O-methyl transferases | 11.2 | putative ATPase similar to GB:AAF28353 from [Fragaria x ananassa] |
AT1G21120 | Q9LPU7 | 26.6 | misc.O-methyl transferases | 16.3 | O-methyltransferase, putative similar to GB:AAF28353 from [Fragaria x ananassa] |
AT1G21130 | Q9LPU8 | 26.6 | misc.O-methyl transferases | 9.6 | O-methyltransferase, putative similar to GB:AAF28353 from [Fragaria x ananassa];supported by full-length cDNA: Ceres:101583. |
AT1G21100 | Q9LPU5 | 26.6 | misc.O-methyl transferases | 12.2 | O-methyltransferase, putative similar to GB:AAF28353 from [Fragaria x ananassa]; supported by cDNA: gi_15982843_gb_AY057529.1_ |
AT1G14540 | Q9LE15 | 26.9 | misc.glutathione S transferases | 2 | anionic peroxidase, putative similar to anionic peroxidase GI:170202 from [Nicotiana sylvestris] |
AT1G14360 | Q9M9S6 | 34.11 | transport.NDP-sugars at the ER | 2.8 | unknown protein ;supported by full-length cDNA: Ceres:6937. |
AT1G71697 | Q9M9H6 | 11.3.2 | lipid metabolism.Phospholipid synthesis.choline kinase | 2.7 | choline kinase, putative similar to CHOLINE/ETHANOLAMINE KINASE GB:Q9Y259 from [Homo sapiens] |
AT1G14370 | O49839 | 29.4.1.57 | protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII | 2 | protein kinase identical to protein kinase GI:2852447 from [Arabidopsis thaliana]; supported by cDNA: gi_2852446_dbj_D88206.1_D88206 |
AT1G50010 | B9DGT7 | 31.1 | cell.organisation | 2.1 | tubulin alpha-2/alpha-4 chain, putative identical to tubulin alpha-2/alpha-4 chain GB:P29510 from [Arabidopsis thaliana]; supported by cDNA: gi_15294277_gb_AF410330.1_AF410330 |
AT1G27730 | Q96289 | 27.3.11 | RNA.regulation of transcription.C2H2 zinc finger family | 3.4 | salt-tolerance zinc finger protein identical to salt-tolerance zinc finger protein GB:CAA64820 GI:1565227 from [Arabidopsis thaliana]; supported by cDNA: gi_14334649_gb_AY034998.1_ |
AT1G18390 | P0C5E2 | 30.2.20 | signalling.receptor kinases.wheat LRK10 like | 5 | wall-associated kinase, putative similar to wall-associated kinase 2 GB:CAB42872 GI:4826399 from [Arabidopsis thaliana] |
AT1G18380 | #N/A | #N/A | #N/A | 5.7 | hypothetical protein similar to hypothetical protein GB:AAF25996 GI:6714300 from [Arabidopsis thaliana] |