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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT1G21120
Q9LPU7
26.6
misc.O-methyl transferases
11.2
putative ATPase similar to GB:AAF28353 from [Fragaria x ananassa]
AT1G21120
Q9LPU7
26.6
misc.O-methyl transferases
16.3
O-methyltransferase, putative similar to GB:AAF28353 from [Fragaria x ananassa]
AT1G21130
Q9LPU8
26.6
misc.O-methyl transferases
9.6
O-methyltransferase, putative similar to GB:AAF28353 from [Fragaria x ananassa];supported by full-length cDNA: Ceres:101583.
AT1G21100
Q9LPU5
26.6
misc.O-methyl transferases
12.2
O-methyltransferase, putative similar to GB:AAF28353 from [Fragaria x ananassa]; supported by cDNA: gi_15982843_gb_AY057529.1_
AT1G14540
Q9LE15
26.9
misc.glutathione S transferases
2
anionic peroxidase, putative similar to anionic peroxidase GI:170202 from [Nicotiana sylvestris]
AT1G14360
Q9M9S6
34.11
transport.NDP-sugars at the ER
2.8
unknown protein ;supported by full-length cDNA: Ceres:6937.
AT1G71697
Q9M9H6
11.3.2
lipid metabolism.Phospholipid synthesis.choline kinase
2.7
choline kinase, putative similar to CHOLINE/ETHANOLAMINE KINASE GB:Q9Y259 from [Homo sapiens]
AT1G14370
O49839
29.4.1.57
protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII
2
protein kinase identical to protein kinase GI:2852447 from [Arabidopsis thaliana]; supported by cDNA: gi_2852446_dbj_D88206.1_D88206
AT1G50010
B9DGT7
31.1
cell.organisation
2.1
tubulin alpha-2/alpha-4 chain, putative identical to tubulin alpha-2/alpha-4 chain GB:P29510 from [Arabidopsis thaliana]; supported by cDNA: gi_15294277_gb_AF410330.1_AF410330
AT1G27730
Q96289
27.3.11
RNA.regulation of transcription.C2H2 zinc finger family
3.4
salt-tolerance zinc finger protein identical to salt-tolerance zinc finger protein GB:CAA64820 GI:1565227 from [Arabidopsis thaliana]; supported by cDNA: gi_14334649_gb_AY034998.1_
AT1G18390
P0C5E2
30.2.20
signalling.receptor kinases.wheat LRK10 like
5
wall-associated kinase, putative similar to wall-associated kinase 2 GB:CAB42872 GI:4826399 from [Arabidopsis thaliana]
AT1G18380
#N/A
#N/A
#N/A
5.7
hypothetical protein similar to hypothetical protein GB:AAF25996 GI:6714300 from [Arabidopsis thaliana]
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