Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT1G10340 | Q9SY76 | 31.1 | cell.organisation | 2.1 | hypothetical protein predicted by genscan; supported by cDNA: gi_13937239_gb_AF372975.1_AF372975 |
AT1G10410 | Q8LPT2 | 35.2 | not assigned.unknown | 2 | unknown protein similar to ESTs gb|N96021 and gb|N96863 |
AT1G10140 | Q9SY56 | 35.2 | not assigned.unknown | 2.3 | unknown protein similar to EST gb|AA598098;supported by full-length cDNA: Ceres:23916. |
AT1G34460 | Q39072 | 31.3 | cell.cycle | 2 | cyclin, putative similar to GB:AAB02028 from [Arabidopsis thaliana] |
AT1G04980 | Q9MAU6 | 21.1.1 | redox.thioredoxin.PDIL | 4 | disulfide isomerase-related protein, putative similar to GB:AAB50217 from [Homo sapiens] |
AT1G33030 | A0A1P8AUE2 | 16.1 | secondary metabolism.simple phenols | 3.7 | catechol O-methyltransferase, putative similar to catechol O-methyltransferase GI:4808524 from [Thalictrum tuberosum] |
AT1G32960 | Q9MAP5 | 29.5.1 | protein.degradation.subtilases | 5.2 | subtilisin-like serine protease contains similarity to subtilase; SP1 GI:9957714 [Oryza sativa] |
AT1G35720 | Q9SYT0 | 31.1 | cell.organisation | 2.2 | Ca2+-dependent membrane-binding protein annexin idenctical to GB:AAD34236 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:25846. |
AT1G53100 | Q6DBE8 | 26.2 | misc.UDP glucosyl and glucoronyl transferases | 2.1 | unknown protein |
AT1G18890 | Q9M9V8 | 30.3 | signalling.calcium | 2 | calcium-dependent protein kinase, putative similar to calcium-dependent protein kinase GI:604880 from [Arabidopsis thaliana]; supported by cDNA: gi_1235716_dbj_D21805.1_ATHCDPKA |
AT1G79680 | Q8VYA3 | 30.2.25 | signalling.receptor kinases.wall associated kinase | 4.6 | wall-associated kinase 2, putative similar to wall-associated kinase 2 GI:4826399 from [Arabidopsis thaliana] |
AT1G28480 | Q9SGP6 | 21.4 | redox.glutaredoxins | 2.6 | glutaredoxin, putative similar to glutaredoxin GI:2244924 from [Arabidopsis thaliana]; supported by cDNA: gi_13358219_gb_AF325030.2_AF325030 |