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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT1G10340
Q9SY76
31.1
cell.organisation
2.1
hypothetical protein predicted by genscan; supported by cDNA: gi_13937239_gb_AF372975.1_AF372975
AT1G10410
Q8LPT2
35.2
not assigned.unknown
2
unknown protein similar to ESTs gb|N96021 and gb|N96863
AT1G10140
Q9SY56
35.2
not assigned.unknown
2.3
unknown protein similar to EST gb|AA598098;supported by full-length cDNA: Ceres:23916.
AT1G34460
Q39072
31.3
cell.cycle
2
cyclin, putative similar to GB:AAB02028 from [Arabidopsis thaliana]
AT1G04980
Q9MAU6
21.1.1
redox.thioredoxin.PDIL
4
disulfide isomerase-related protein, putative similar to GB:AAB50217 from [Homo sapiens]
AT1G33030
A0A1P8AUE2
16.1
secondary metabolism.simple phenols
3.7
catechol O-methyltransferase, putative similar to catechol O-methyltransferase GI:4808524 from [Thalictrum tuberosum]
AT1G32960
Q9MAP5
29.5.1
protein.degradation.subtilases
5.2
subtilisin-like serine protease contains similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
AT1G35720
Q9SYT0
31.1
cell.organisation
2.2
Ca2+-dependent membrane-binding protein annexin idenctical to GB:AAD34236 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:25846.
AT1G53100
Q6DBE8
26.2
misc.UDP glucosyl and glucoronyl transferases
2.1
unknown protein
AT1G18890
Q9M9V8
30.3
signalling.calcium
2
calcium-dependent protein kinase, putative similar to calcium-dependent protein kinase GI:604880 from [Arabidopsis thaliana]; supported by cDNA: gi_1235716_dbj_D21805.1_ATHCDPKA
AT1G79680
Q8VYA3
30.2.25
signalling.receptor kinases.wall associated kinase
4.6
wall-associated kinase 2, putative similar to wall-associated kinase 2 GI:4826399 from [Arabidopsis thaliana]
AT1G28480
Q9SGP6
21.4
redox.glutaredoxins
2.6
glutaredoxin, putative similar to glutaredoxin GI:2244924 from [Arabidopsis thaliana]; supported by cDNA: gi_13358219_gb_AF325030.2_AF325030
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