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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT2G35930
Q84TG3
27.3.64
RNA.regulation of transcription.PHOR1
3.2
unknown protein
AT2G35980
Q9SJ52
33.99
development.unspecified
6.2
similar to harpin-induced protein hin1 from tobacco ;supported by full-length cDNA: Ceres:26418.
AT2G22500
Q9SJY5
34.9
transport.metabolite transporters at the mitochondrial membrane
3.3
putative mitochondrial dicarboxylate carrier protein ;supported by full-length cDNA: Ceres:20723.
AT2G03760
P52839
17.3.1.1.5
hormone metabolism.brassinosteroid.synthesis-degradation.BRs.metabolic regulation
2.2
putative steroid sulfotransferase ; supported by cDNA: gi_599639_emb_Z46823.1_ATTS4391
AT2G22480
Q8VYN6
4.2.4
glycolysis.plastid branch.phosphofructokinase (PFK)
2.1
putative pyrophosphate--fructose-6-phosphate 1-phosphotransferase
AT2G13790
Q9SKG5
30.2.2
signalling.receptor kinases.leucine rich repeat II
2.7
putative receptor-like protein kinase
AT1G67520
O64793
29.4
protein.postranslational modification
4
receptor kinase, putative similar to receptor kinase 1 GI:9294449 from [Arabidopsis thaliana]
AT1G09210
Q38858
30.3
signalling.calcium
2
putative calcium-binding protein, calreticulin similar to GB:AAA80652;supported by full-length cDNA: Ceres:27210.
AT1G78860
Q9ZVA5
26.16
misc.myrosinases-lectin-jacalin
2.1
hypothetical protein predicted by genemark.hmm
AT1G03370
Q9ZVT9
29.5.11.4.2
protein.degradation.ubiquitin.E3.RING
2.4
unknown protein Contains similarity to gb|AB011110 KIAA0538 protein from Homo sapiens brain and to phospholipid-binding domain C2 PF|00168. ESTs gb|AA585988 and gb|T04384 come from this gene
AT2G25110
Q93ZE8
35.1
not assigned.no ontology
2.5
unknown protein similarity to stromal cell-derived factor 2, Mus musculus, PIR2:JC5105; contains EST gb:T22533, AA067386, Z18160;supported by full-length cDNA: Ceres:40987.
AT1G61800
Q94B38
34.8
transport.metabolite transporters at the envelope membrane
7.6
glucose-6-phosphate/phosphate-translocator precursor, putative similar to glucose-6-phosphate/phosphate-translocator precursor GI:2997591 from [Pisum sativum]; supported by cDNA: gi_14596172_gb_AY042874.1_
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