Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT2G35930 | Q84TG3 | 27.3.64 | RNA.regulation of transcription.PHOR1 | 3.2 | unknown protein |
AT2G35980 | Q9SJ52 | 33.99 | development.unspecified | 6.2 | similar to harpin-induced protein hin1 from tobacco ;supported by full-length cDNA: Ceres:26418. |
AT2G22500 | Q9SJY5 | 34.9 | transport.metabolite transporters at the mitochondrial membrane | 3.3 | putative mitochondrial dicarboxylate carrier protein ;supported by full-length cDNA: Ceres:20723. |
AT2G03760 | P52839 | 17.3.1.1.5 | hormone metabolism.brassinosteroid.synthesis-degradation.BRs.metabolic regulation | 2.2 | putative steroid sulfotransferase ; supported by cDNA: gi_599639_emb_Z46823.1_ATTS4391 |
AT2G22480 | Q8VYN6 | 4.2.4 | glycolysis.plastid branch.phosphofructokinase (PFK) | 2.1 | putative pyrophosphate--fructose-6-phosphate 1-phosphotransferase |
AT2G13790 | Q9SKG5 | 30.2.2 | signalling.receptor kinases.leucine rich repeat II | 2.7 | putative receptor-like protein kinase |
AT1G67520 | O64793 | 29.4 | protein.postranslational modification | 4 | receptor kinase, putative similar to receptor kinase 1 GI:9294449 from [Arabidopsis thaliana] |
AT1G09210 | Q38858 | 30.3 | signalling.calcium | 2 | putative calcium-binding protein, calreticulin similar to GB:AAA80652;supported by full-length cDNA: Ceres:27210. |
AT1G78860 | Q9ZVA5 | 26.16 | misc.myrosinases-lectin-jacalin | 2.1 | hypothetical protein predicted by genemark.hmm |
AT1G03370 | Q9ZVT9 | 29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING | 2.4 | unknown protein Contains similarity to gb|AB011110 KIAA0538 protein from Homo sapiens brain and to phospholipid-binding domain C2 PF|00168. ESTs gb|AA585988 and gb|T04384 come from this gene |
AT2G25110 | Q93ZE8 | 35.1 | not assigned.no ontology | 2.5 | unknown protein similarity to stromal cell-derived factor 2, Mus musculus, PIR2:JC5105; contains EST gb:T22533, AA067386, Z18160;supported by full-length cDNA: Ceres:40987. |
AT1G61800 | Q94B38 | 34.8 | transport.metabolite transporters at the envelope membrane | 7.6 | glucose-6-phosphate/phosphate-translocator precursor, putative similar to glucose-6-phosphate/phosphate-translocator precursor GI:2997591 from [Pisum sativum]; supported by cDNA: gi_14596172_gb_AY042874.1_ |