Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT2G22250 | Q9SIE1 | 13.1.1.2.1 | amino acid metabolism.synthesis.central amino acid metabolism.aspartate.aspartate aminotransferase | 2.1 | putative aspartate aminotransferase ;supported by full-length cDNA: Ceres:112880. |
AT2G28630 | Q9SIB2 | 11.1.10 | lipid metabolism.FA synthesis and FA elongation.beta ketoacyl CoA synthase | 2.8 | putative fatty acid elongase ;supported by full-length cDNA: Ceres:115769. |
AT2G31800 | Q9SKC0 | 29.4 | protein.postranslational modification | 2.6 | putative protein kinase contains a protein kinase domain profile (PDOC00100) |
AT2G21620 | Q94II5 | 20.2.99 | stress.abiotic.unspecified | 2.2 | unknown protein ;supported by full-length cDNA: Ceres:31655. |
AT2G15390 | Q9SJP2 | 10.5.1.2 | cell wall.cell wall proteins.AGPs.AGP Fucosyltransferase | 3.5 | unknown protein |
AT2G46400 | Q9SKD9 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 2.2 | putative WRKY-type DNA binding protein ; supported by cDNA: gi_15430276_gb_AY046275.1_ |
AT2G24600 | Q9SJA5 | 31.1 | cell.organisation | 2.3 | hypothetical protein predicted by genscan; supported by cDNA: gi_15810330_gb_AY056204.1_ |
AT2G04400 | P49572 | 13.1.6.5.4 | amino acid metabolism.synthesis.aromatic aa.tryptophan.indole-3-glycerol phosphate synthase | 3.6 | putative indole-3-glycerol phosphate synthase ;supported by full-length cDNA: Ceres:3006. |
AT2G04450 | Q9SJC4 | 23.3.3 | nucleotide metabolism.salvage.NUDIX hydrolases | 2.5 | putative mutT domain protein |
AT2G36490 | Q9SJQ6 | 28.2 | DNA.repair | 2.2 | hypothetical protein predicted by genscan |
AT2G36580 | Q9SJQ0 | 4.1.14 | glycolysis.cytosolic branch.pyruvate kinase (PK) | 2 | putative pyruvate kinase ;supported by full-length cDNA: Ceres:120685. |
AT2G36220 | Q9SJN3 | 35.2 | not assigned.unknown | 2.5 | unknown protein ;supported by full-length cDNA: Ceres:12251. |