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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT2G22250
Q9SIE1
13.1.1.2.1
amino acid metabolism.synthesis.central amino acid metabolism.aspartate.aspartate aminotransferase
2.1
putative aspartate aminotransferase ;supported by full-length cDNA: Ceres:112880.
AT2G28630
Q9SIB2
11.1.10
lipid metabolism.FA synthesis and FA elongation.beta ketoacyl CoA synthase
2.8
putative fatty acid elongase ;supported by full-length cDNA: Ceres:115769.
AT2G31800
Q9SKC0
29.4
protein.postranslational modification
2.6
putative protein kinase contains a protein kinase domain profile (PDOC00100)
AT2G21620
Q94II5
20.2.99
stress.abiotic.unspecified
2.2
unknown protein ;supported by full-length cDNA: Ceres:31655.
AT2G15390
Q9SJP2
10.5.1.2
cell wall.cell wall proteins.AGPs.AGP Fucosyltransferase
3.5
unknown protein
AT2G46400
Q9SKD9
27.3.32
RNA.regulation of transcription.WRKY domain transcription factor family
2.2
putative WRKY-type DNA binding protein ; supported by cDNA: gi_15430276_gb_AY046275.1_
AT2G24600
Q9SJA5
31.1
cell.organisation
2.3
hypothetical protein predicted by genscan; supported by cDNA: gi_15810330_gb_AY056204.1_
AT2G04400
P49572
13.1.6.5.4
amino acid metabolism.synthesis.aromatic aa.tryptophan.indole-3-glycerol phosphate synthase
3.6
putative indole-3-glycerol phosphate synthase ;supported by full-length cDNA: Ceres:3006.
AT2G04450
Q9SJC4
23.3.3
nucleotide metabolism.salvage.NUDIX hydrolases
2.5
putative mutT domain protein
AT2G36490
Q9SJQ6
28.2
DNA.repair
2.2
hypothetical protein predicted by genscan
AT2G36580
Q9SJQ0
4.1.14
glycolysis.cytosolic branch.pyruvate kinase (PK)
2
putative pyruvate kinase ;supported by full-length cDNA: Ceres:120685.
AT2G36220
Q9SJN3
35.2
not assigned.unknown
2.5
unknown protein ;supported by full-length cDNA: Ceres:12251.
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