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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT4G13900
Q9SVM3
35.2
not assigned.unknown
n.c.
putative disease resistance protein
AT4G23290
Q3E9X6
30.2.17
signalling.receptor kinases.DUF 26
n.c.
serine/threonine kinase - like protein
AT3G56370
Q9LY03
30.2.7
signalling.receptor kinases.leucine rich repeat VII
-2.5
putative protein
AT3G45640
Q39023
30.6
signalling.MAP kinases
2
MPK3, mitogen-activated protein kinase 3 ; supported by cDNA: gi_14423447_gb_AF386961.1_AF386961
AT1G01560
Q9LMM5
30.6
signalling.MAP kinases
3
MPK11, MAP kinase, putative similar to MAP kinase 5 GI:4239889 from [Zea mays]
AT4G29810
Q9S7U9
29.4.1
protein.postranslational modification.kinase
1.8
MKK2, MAP kinase kinase 2 ; supported by cDNA: gi_14326470_gb_AF385688.1_AF385688
AT4G26070
Q94A06
30.6
signalling.MAP kinases
1.7
MKK1, mitogen activated protein kinase kinase (nMAPKK) ;supported by full-length cDNA: Ceres:31259.
AT5G03730
Q05609
29.4
protein.postranslational modification
1.9
SERINE/THREONINE-PROTEIN KINASE CTR1
AT5G67080
Q9FHA5
29.4
protein.postranslational modification
6.6
protein kinase-like protein, MAPKKK19
AT5G66850
Q9C5H5
30.6
signalling.MAP kinases
2.4
MAP protein kinase, MAPKKK5 ; supported by cDNA: gi_13430659_gb_AF360242.1_AF360242
AT2G31800
Q9SKC0
29.4
protein.postranslational modification
2.6
RAF23, putative protein kinase contains a protein kinase domain profile (PDOC00100)
AT5G57610
Q9FKL3
29.4
protein.postranslational modification
n.c.
RAF35, putative protein contains similarity to protein kinase, RAF23
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