Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT4G13900 | Q9SVM3 | 35.2 | not assigned.unknown | n.c. | putative disease resistance protein |
AT4G23290 | Q3E9X6 | 30.2.17 | signalling.receptor kinases.DUF 26 | n.c. | serine/threonine kinase - like protein |
AT3G56370 | Q9LY03 | 30.2.7 | signalling.receptor kinases.leucine rich repeat VII | -2.5 | putative protein |
AT3G45640 | Q39023 | 30.6 | signalling.MAP kinases | 2 | MPK3, mitogen-activated protein kinase 3 ; supported by cDNA: gi_14423447_gb_AF386961.1_AF386961 |
AT1G01560 | Q9LMM5 | 30.6 | signalling.MAP kinases | 3 | MPK11, MAP kinase, putative similar to MAP kinase 5 GI:4239889 from [Zea mays] |
AT4G29810 | Q9S7U9 | 29.4.1 | protein.postranslational modification.kinase | 1.8 | MKK2, MAP kinase kinase 2 ; supported by cDNA: gi_14326470_gb_AF385688.1_AF385688 |
AT4G26070 | Q94A06 | 30.6 | signalling.MAP kinases | 1.7 | MKK1, mitogen activated protein kinase kinase (nMAPKK) ;supported by full-length cDNA: Ceres:31259. |
AT5G03730 | Q05609 | 29.4 | protein.postranslational modification | 1.9 | SERINE/THREONINE-PROTEIN KINASE CTR1 |
AT5G67080 | Q9FHA5 | 29.4 | protein.postranslational modification | 6.6 | protein kinase-like protein, MAPKKK19 |
AT5G66850 | Q9C5H5 | 30.6 | signalling.MAP kinases | 2.4 | MAP protein kinase, MAPKKK5 ; supported by cDNA: gi_13430659_gb_AF360242.1_AF360242 |
AT2G31800 | Q9SKC0 | 29.4 | protein.postranslational modification | 2.6 | RAF23, putative protein kinase contains a protein kinase domain profile (PDOC00100) |
AT5G57610 | Q9FKL3 | 29.4 | protein.postranslational modification | n.c. | RAF35, putative protein contains similarity to protein kinase, RAF23 |