Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT1G65690 | Q8LD98 | 35.1 | not assigned.no ontology | 5.1 | hypothetical protein similar to hin1 GB:Y07563 GI:1619320 Nicotiana tabacum;supported by full-length cDNA: Ceres:21639. |
AT1G79450 | Q8L8W0 | 34.1 | transport.p- and v-ATPases | 3.1 | hypothetical protein similar to unknown protein GI:4585976 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:94828. |
AT1G75780 | P12411 | 31.1 | cell.organisation | 2.1 | tubulin beta-1 chain identical to GB:P12411 GI:135442 from [Arabidopsis thaliana](Gene 63 (1), 87-102 (1988)) |
AT1G78460 | Q93ZB8 | 35.1 | not assigned.no ontology | 3 | hypothetical protein predicted by genemark.hmm |
AT1G78600 | Q9SYM2 | 27.3.7 | RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family | 3 | zinc finger protein, putative similar to zinc finger protein GI:3618316 from [Oryza sativa];supported by full-length cDNA: Ceres:34830. |
AT1G54010 | Q8W4H8 | 16.5.1.3.1 | secondary metabolism.sulfur-containing.glucosinolates.degradation.myrosinase | 3.5 | myrosinase-associated protein, putative similar to myrosinase-associated protein GI:1769969 from [Brassica napus];supported by full-length cDNA: Ceres:101419. |
AT1G54020 | Q9C5N8 | 16.5.1.3.1 | secondary metabolism.sulfur-containing.glucosinolates.degradation.myrosinase | 2.7 | myrosinase-associated protein, putative similar to myrosinase-associated protein GI:1769967 from [Brassica napus]; supported by cDNA: gi_15809979_gb_AY054258.1_ |
AT1G05575 | #N/A | 35.2 | not assigned.unknown | 5.1 | Expressed protein ; supported by full-length cDNA: Ceres: 27081. |
AT1G30720 | Q9SA87 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | 2.8 | putative reticuline oxidase-like protein similar to GB:P30986 from [Eschscholzia californica] ( berberine bridge-forming enzyme ), ESTs gb|F19886, gb|Z30784 and gb|Z30785 come from this gene |
AT1G30620 | Q9SA77 | 10.1.9 | cell wall.precursor synthesis.MUR4 | 6.6 | UDP-galactose 4-epimerase-like protein similar to proteins from many bacterial species including [Bacillus subtilis] and [Methanobacterium thermoautotrophicum] |
AT2G40140 | Q9XEE6 | 27.3.12 | RNA.regulation of transcription.C3H zinc finger family | 4.2 | putative CCCH-type zinc finger protein also an ankyrin-repeat protein |
AT2G28710 | Q9SI97 | 27.3.11 | RNA.regulation of transcription.C2H2 zinc finger family | 2.4 | putative C2H2-type zinc finger protein likely a nucleic acid binding protein |