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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT1G65690
Q8LD98
35.1
not assigned.no ontology
5.1
hypothetical protein similar to hin1 GB:Y07563 GI:1619320 Nicotiana tabacum;supported by full-length cDNA: Ceres:21639.
AT1G79450
Q8L8W0
34.1
transport.p- and v-ATPases
3.1
hypothetical protein similar to unknown protein GI:4585976 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:94828.
AT1G75780
P12411
31.1
cell.organisation
2.1
tubulin beta-1 chain identical to GB:P12411 GI:135442 from [Arabidopsis thaliana](Gene 63 (1), 87-102 (1988))
AT1G78460
Q93ZB8
35.1
not assigned.no ontology
3
hypothetical protein predicted by genemark.hmm
AT1G78600
Q9SYM2
27.3.7
RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family
3
zinc finger protein, putative similar to zinc finger protein GI:3618316 from [Oryza sativa];supported by full-length cDNA: Ceres:34830.
AT1G54010
Q8W4H8
16.5.1.3.1
secondary metabolism.sulfur-containing.glucosinolates.degradation.myrosinase
3.5
myrosinase-associated protein, putative similar to myrosinase-associated protein GI:1769969 from [Brassica napus];supported by full-length cDNA: Ceres:101419.
AT1G54020
Q9C5N8
16.5.1.3.1
secondary metabolism.sulfur-containing.glucosinolates.degradation.myrosinase
2.7
myrosinase-associated protein, putative similar to myrosinase-associated protein GI:1769967 from [Brassica napus]; supported by cDNA: gi_15809979_gb_AY054258.1_
AT1G05575
#N/A
35.2
not assigned.unknown
5.1
Expressed protein ; supported by full-length cDNA: Ceres: 27081.
AT1G30720
Q9SA87
26.8
misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases
2.8
putative reticuline oxidase-like protein similar to GB:P30986 from [Eschscholzia californica] ( berberine bridge-forming enzyme ), ESTs gb|F19886, gb|Z30784 and gb|Z30785 come from this gene
AT1G30620
Q9SA77
10.1.9
cell wall.precursor synthesis.MUR4
6.6
UDP-galactose 4-epimerase-like protein similar to proteins from many bacterial species including [Bacillus subtilis] and [Methanobacterium thermoautotrophicum]
AT2G40140
Q9XEE6
27.3.12
RNA.regulation of transcription.C3H zinc finger family
4.2
putative CCCH-type zinc finger protein also an ankyrin-repeat protein
AT2G28710
Q9SI97
27.3.11
RNA.regulation of transcription.C2H2 zinc finger family
2.4
putative C2H2-type zinc finger protein likely a nucleic acid binding protein
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