Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT2G37480 | #N/A | 35.2 | not assigned.unknown | 2.3 | unknown protein supported by cDNA: gi:13926173 |
AT1G14250 | Q6NQA8 | 23.2 | nucleotide metabolism.degradation | 5.2 | hypothetical protein |
AT1G76040 | Q8RWL2 | 30.3 | signalling.calcium | 4 | calcium-dependent protein kinase, putative similar to calcium-dependent protein kinase GB:AAC25423 GI:3283996 [Nicotiana tabacum] |
AT1G62790 | Q6NLF7 | 26.21 | misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | 2 | unknown protein |
AT1G16420 | Q9SA41 | 29.5 | protein.degradation | 3.5 | hypothetical protein similar to gb|AF098458 latex-abundant protein (LAR) from Hevea brasiliensis |
AT1G10700 | Q93Z66 | 23.1.3 | nucleotide metabolism.synthesis.PRS-PP | 3.9 | phosphoribosyl diphosphate synthase identical to phosphoribosyl diphosphate synthase GI:4902470 from (Arabidopsis thaliana); supported by cDNA: gi_16604385_gb_AY058091.1_ |
AT1G13210 | Q9SAF5 | 34.1 | transport.p- and v-ATPases | 2.3 | puative calcium-transporting ATPase similar to gb|AF038007 FIC1 gene from Homo sapiens and is a member of the PF|00122 E1-E2 ATPase family. ESTs gb|T45045 and gb|AA394473 come from this gene |
AT1G20840 | Q96290 | 34.2 | transport.sugars | 2.1 | putative sugar transporter protein nearly identical to Arabidopsis sugar transporter, gi|1495273 |
AT1G14730 | Q67ZF6 | 21.2 | redox.ascorbate and glutathione | 3 | cytochrome B561, putative similar to cytochrome GB:AAD11424 GI:4206110 [Mesembryanthemum crystallinum] |
AT1G14780 | Q8L612 | 35.2 | not assigned.unknown | 2.3 | hypothetical protein |
AT1G59870 | Q9XIE2 | 34.16 | transport.ABC transporters and multidrug resistance systems | 2.2 | ABC transporter, putative similar to ABC transporter GI:9279716 from [Arabidopsis thaliana] |
AT1G59860 | Q9XIE3 | 20.2.1 | stress.abiotic.heat | 3.3 | heat shock protein, putative similar to heat shock protein GI:19617 from [Medicago sativa];supported by full-length cDNA: Ceres:32795. |