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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT2G37480
#N/A
35.2
not assigned.unknown
2.3
unknown protein supported by cDNA: gi:13926173
AT1G14250
Q6NQA8
23.2
nucleotide metabolism.degradation
5.2
hypothetical protein
AT1G76040
Q8RWL2
30.3
signalling.calcium
4
calcium-dependent protein kinase, putative similar to calcium-dependent protein kinase GB:AAC25423 GI:3283996 [Nicotiana tabacum]
AT1G62790
Q6NLF7
26.21
misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein
2
unknown protein
AT1G16420
Q9SA41
29.5
protein.degradation
3.5
hypothetical protein similar to gb|AF098458 latex-abundant protein (LAR) from Hevea brasiliensis
AT1G10700
Q93Z66
23.1.3
nucleotide metabolism.synthesis.PRS-PP
3.9
phosphoribosyl diphosphate synthase identical to phosphoribosyl diphosphate synthase GI:4902470 from (Arabidopsis thaliana); supported by cDNA: gi_16604385_gb_AY058091.1_
AT1G13210
Q9SAF5
34.1
transport.p- and v-ATPases
2.3
puative calcium-transporting ATPase similar to gb|AF038007 FIC1 gene from Homo sapiens and is a member of the PF|00122 E1-E2 ATPase family. ESTs gb|T45045 and gb|AA394473 come from this gene
AT1G20840
Q96290
34.2
transport.sugars
2.1
putative sugar transporter protein nearly identical to Arabidopsis sugar transporter, gi|1495273
AT1G14730
Q67ZF6
21.2
redox.ascorbate and glutathione
3
cytochrome B561, putative similar to cytochrome GB:AAD11424 GI:4206110 [Mesembryanthemum crystallinum]
AT1G14780
Q8L612
35.2
not assigned.unknown
2.3
hypothetical protein
AT1G59870
Q9XIE2
34.16
transport.ABC transporters and multidrug resistance systems
2.2
ABC transporter, putative similar to ABC transporter GI:9279716 from [Arabidopsis thaliana]
AT1G59860
Q9XIE3
20.2.1
stress.abiotic.heat
3.3
heat shock protein, putative similar to heat shock protein GI:19617 from [Medicago sativa];supported by full-length cDNA: Ceres:32795.
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