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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT2G13810
Q9ZQI7
13.1.6.2
amino acid metabolism.synthesis.aromatic aa.phenylalanine and tyrosine
2.5
putative aspartate aminotransferase ; supported by cDNA: gi_15982837_gb_AY057526.1_
AT2G25470
Q9SKK2
20.1
stress.biotic
2
putative disease resistance protein
AT2G32210
Q9SKX9
35.2
not assigned.unknown
2.3
unknown protein ;supported by full-length cDNA: Ceres:31665.
AT2G32190
Q9SKY1
35.2
not assigned.unknown
2.2
unknown protein ; supported by full-length cDNA: Ceres: 40344.
AT2G32240
F4ISU2
35.2
not assigned.unknown
2.9
putative myosin heavy chain ; supported by cDNA: gi_15982766_gb_AY057490.1_
AT2G03540
#N/A
35.2
not assigned.unknown
4
hypothetical protein predicted by genscan
AT2G03530
Q9ZQ89
29.5.11.4.3.2
protein.degradation.ubiquitin.E3.SCF.FBOX
2.4
putative integral membrane protein
AT2G32140
Q9SKY6
20.1.2
stress.biotic.receptors
2.2
putative disease resistance protein
AT2G32030
Q9SKZ6
26.24
misc.GCN5-related N-acetyltransferase
5
putative alanine acetyl transferase
AT2G31990
Q5XF04
26.2
misc.UDP glucosyl and glucoronyl transferases
2.1
hypothetical protein predicted by genscan
AT2G07370
Q9ZQK5
#N/A
#N/A
2.7
unknown protein
AT2G15040
#N/A
20.1
stress.biotic
2.5
putative disease resistance protein
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