Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT2G13810 | Q9ZQI7 | 13.1.6.2 | amino acid metabolism.synthesis.aromatic aa.phenylalanine and tyrosine | 2.5 | putative aspartate aminotransferase ; supported by cDNA: gi_15982837_gb_AY057526.1_ |
AT2G25470 | Q9SKK2 | 20.1 | stress.biotic | 2 | putative disease resistance protein |
AT2G32210 | Q9SKX9 | 35.2 | not assigned.unknown | 2.3 | unknown protein ;supported by full-length cDNA: Ceres:31665. |
AT2G32190 | Q9SKY1 | 35.2 | not assigned.unknown | 2.2 | unknown protein ; supported by full-length cDNA: Ceres: 40344. |
AT2G32240 | F4ISU2 | 35.2 | not assigned.unknown | 2.9 | putative myosin heavy chain ; supported by cDNA: gi_15982766_gb_AY057490.1_ |
AT2G03540 | #N/A | 35.2 | not assigned.unknown | 4 | hypothetical protein predicted by genscan |
AT2G03530 | Q9ZQ89 | 29.5.11.4.3.2 | protein.degradation.ubiquitin.E3.SCF.FBOX | 2.4 | putative integral membrane protein |
AT2G32140 | Q9SKY6 | 20.1.2 | stress.biotic.receptors | 2.2 | putative disease resistance protein |
AT2G32030 | Q9SKZ6 | 26.24 | misc.GCN5-related N-acetyltransferase | 5 | putative alanine acetyl transferase |
AT2G31990 | Q5XF04 | 26.2 | misc.UDP glucosyl and glucoronyl transferases | 2.1 | hypothetical protein predicted by genscan |
AT2G07370 | Q9ZQK5 | #N/A | #N/A | 2.7 | unknown protein |
AT2G15040 | #N/A | 20.1 | stress.biotic | 2.5 | putative disease resistance protein |