Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT1G05010 | Q06588 | 17.5.1.2 | hormone metabolism.ethylene.synthesis-degradation.1-aminocyclopropane-1-carboxylate oxidase | 3.6 | 1-aminocyclopropane-1-carboxylate oxidase Identical to 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase) gb|X66719 (EAT1). ESTs gb|T43073, gb|T5714, gb|R90435, gb|R44023, gb|AA597926, gb|AI099676, gb|AA650810 and gb|29725 come from this gene |
AT2G02010 | Q9ZPS3 | 13.1.1.1.1 | amino acid metabolism.synthesis.central amino acid metabolism.GABA.Glutamate decarboxylase | 9.1 | putative glutamate decarboxylase ; supported by cDNA: gi_13605709_gb_AF361836.1_AF361836 |
AT2G43000 | Q9SK55 | 33.99 | development.unspecified | 4 | NAM (no apical meristem)-like protein |
AT2G06510 | Q9SKI4 | 29.5 | protein.degradation | 2 | putative replication protein A1 |
AT2G20900 | Q9C5E5 | 11.3.5 | lipid metabolism.Phospholipid synthesis.diacylglycerol kinase | 2.1 | putative diacylglycerol kinase ;supported by full-length cDNA: Ceres:15863. |
AT2G20960 | Q67YW6 | 35.1 | not assigned.no ontology | 2.1 | pEARLI 4 protein Same as GB: L43081; supported by cDNA: gi_871781_gb_L43081.1_ATHPEARA |
AT2G46620 | F4IJ77 | 29.5.9 | protein.degradation.AAA type | 3.1 | hypothetical protein predicted by genefinder |
AT2G15480 | Q9ZQG4 | 26.2 | misc.UDP glucosyl and glucoronyl transferases | 2.6 | putative glucosyltransferase |
AT2G06050 | Q9FUP0 | 17.7.1.5 | hormone metabolism.jasmonate.synthesis-degradation.12-Oxo-PDA-reductase | 2.5 | 12-oxophytodienoate-10,11-reductase ; supported by cDNA: gi_15294261_gb_AF410322.1_AF410322 |
AT2G28210 | F4IHR4 | 8.3 | TCA / org transformation.carbonic anhydrases | 3.8 | putative carbonic anhydrase |
AT2G20145 | #N/A | #N/A | #N/A | 2.4 | Expressed protein ; supported by cDNA: gi_13605516_gb_AF361584.1_AF361584 |
AT2G27310 | Q9XIN8 | 29.5.11.4.3.2 | protein.degradation.ubiquitin.E3.SCF.FBOX | 2.1 | unknown protein |