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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT1G05010
Q06588
17.5.1.2
hormone metabolism.ethylene.synthesis-degradation.1-aminocyclopropane-1-carboxylate oxidase
3.6
1-aminocyclopropane-1-carboxylate oxidase Identical to 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase) gb|X66719 (EAT1). ESTs gb|T43073, gb|T5714, gb|R90435, gb|R44023, gb|AA597926, gb|AI099676, gb|AA650810 and gb|29725 come from this gene
AT2G02010
Q9ZPS3
13.1.1.1.1
amino acid metabolism.synthesis.central amino acid metabolism.GABA.Glutamate decarboxylase
9.1
putative glutamate decarboxylase ; supported by cDNA: gi_13605709_gb_AF361836.1_AF361836
AT2G43000
Q9SK55
33.99
development.unspecified
4
NAM (no apical meristem)-like protein
AT2G06510
Q9SKI4
29.5
protein.degradation
2
putative replication protein A1
AT2G20900
Q9C5E5
11.3.5
lipid metabolism.Phospholipid synthesis.diacylglycerol kinase
2.1
putative diacylglycerol kinase ;supported by full-length cDNA: Ceres:15863.
AT2G20960
Q67YW6
35.1
not assigned.no ontology
2.1
pEARLI 4 protein Same as GB: L43081; supported by cDNA: gi_871781_gb_L43081.1_ATHPEARA
AT2G46620
F4IJ77
29.5.9
protein.degradation.AAA type
3.1
hypothetical protein predicted by genefinder
AT2G15480
Q9ZQG4
26.2
misc.UDP glucosyl and glucoronyl transferases
2.6
putative glucosyltransferase
AT2G06050
Q9FUP0
17.7.1.5
hormone metabolism.jasmonate.synthesis-degradation.12-Oxo-PDA-reductase
2.5
12-oxophytodienoate-10,11-reductase ; supported by cDNA: gi_15294261_gb_AF410322.1_AF410322
AT2G28210
F4IHR4
8.3
TCA / org transformation.carbonic anhydrases
3.8
putative carbonic anhydrase
AT2G20145
#N/A
#N/A
#N/A
2.4
Expressed protein ; supported by cDNA: gi_13605516_gb_AF361584.1_AF361584
AT2G27310
Q9XIN8
29.5.11.4.3.2
protein.degradation.ubiquitin.E3.SCF.FBOX
2.1
unknown protein
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